| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3989 |
|---|
| Symbol | |
|---|
| ID | 8449608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 4405520 |
|---|
| End bp | 4406221 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645043034 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_003203270 |
|---|
| Protein GI | 258654114 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.197568 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.18397 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATTTCA GCTTCCTGAC CGACCCCCGG TACGACATCC TCGGTGCGTT CTGGATGACC
GTGCAGCTGA CCTTCTGGTC GGCGATCGGG TCGTTCATCC TCGGGGTGAT TCTGGCGGCG
ATGCGGGTGA GCCCGGTGCC GCTGATGCGC TCGTTCGCGG GCGGCTTCGT CAATGTGGTC
CGCAACATCC CGCTGACCCT GATCATCATC ATGATGTCGC AGGTGGTGGC CAATCAGCTC
GGCCTGCGCC TGGCCGTCCG TGAGGCCGGC GTCAACCCGC AGGCCTTCCT GAACTCGCAG
AACTTCCGGC TGGCCGTCCT GGGCTTCATC ATCTACACCT CGACCTTCGT CTGCGAGGCG
ATCCGGTCGG GCATCAACAC CGTGCCCCCC GGCCAGGCCG AGGCCGCCCG GGCGATCGGC
CTGAAGTTCA CCCAGGTGCT GGGCATCGTC GTCCTGCCGC AGGCGATCCG GGCGGTGATC
GCCCCGCTGG GTTCGGTGCT GATCGCCTTG ACCAAGAACA CGACGGTGGC CTCGGCCATC
GGGGTGGCGG AGGCGGCCCT GTTGATGAAC ACGCTGCTGG AGAACGAGGC GGACAAGTTC
ACCGCCGTCT TCCTCGTGAT CGCCGCCGGG TTCATCGTGT TGACCCTGCC GACCGGCCTG
ATCTTCGGCG CGGTCGCCAA CAAGTACCAG GTGAAGCGAT GA
|
|---|
| Protein sequence | MDFSFLTDPR YDILGAFWMT VQLTFWSAIG SFILGVILAA MRVSPVPLMR SFAGGFVNVV
RNIPLTLIII MMSQVVANQL GLRLAVREAG VNPQAFLNSQ NFRLAVLGFI IYTSTFVCEA
IRSGINTVPP GQAEAARAIG LKFTQVLGIV VLPQAIRAVI APLGSVLIAL TKNTTVASAI
GVAEAALLMN TLLENEADKF TAVFLVIAAG FIVLTLPTGL IFGAVANKYQ VKR
|
|---|
| |