| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3884 |
|---|
| Symbol | |
|---|
| ID | 8449503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 4278096 |
|---|
| End bp | 4279589 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 645042932 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003203168 |
|---|
| Protein GI | 258654012 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.445629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.108787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCCA CCCTGCTGAG CGACCTGCTG GACGCCGCCG CGGCCCGGCA GCCGCAGGCA
CCCGCGCTGA CCGCCGGCGA CCGAACCGAC AGCTACCTCG ACCTGGCCAC CGAGAGCCGG
CGGGCGGCGG GCTGGCTGGC GGCGCGCGGC ATCGGCCGGC GGGACCGGGT GGTGGTGCTG
GCCCAGGACC ACCGGCTGCA GGTGCCGGTC CTGTTCGGCT GCGCCCGGAT CGGCGCGATC
TTCGTCCTGC TGCACGAGGA TCTGGCCGAC CCCACCGTCC GGCACGTCCT GGCGGACACC
GCACCCACCC TGTTGATCAC CGACCGCCCG GACGCGGCGG CCCAGGCGCA GCGGCTCGGC
GTGCCCGTGG TGTCGGCGGC GCAGACCCGG GACGGCATTG CCGCCGCGCC CCCCGCCGAT
CCGCCGCGGC CGCTGAGCGT CGATCCCGCG TGCCTGATCT ACACCTCGGG CAGCACCGGG
ATGCCGAACG CGGTGGTGTC CACGCACGCG CAGATGGTGT TCGCGGCCCG GGCGATCCAG
TCCCAGCTGG GCTACCGGCC CGACGACGTG GTGTTCTGCC CGCTACCGTT GTCGTTCGAC
TACGGTTTGT ACCAGGTGTT TCTCGCCGCC CTGGGGGGCG CGCAGCTGCA CCTGGGCTCG
GCCCAGGACG CCGGCCTGGG GTTGCTGCGC CGGCTGCGCA CGGTCGGTGC GACGGTGATG
CCGGCCCTGC CGTCCCTGGC CGCCATCCTG GCCCGGCTGC TCGAACGCTA TGGCGGCACC
GTGGACCTGC GCCTGATCAC CAACACCGGC GCCGCCATGC CCGCCAGCAC CATCGCCCGA
CTCCGCCGGC TGTTGCCGGA CGTGCGGATC CAGTTGATGT TCGGGCTGAC CGAGTGCAAG
CGGGTGAGCA TCATGCCCCC GGACGGCGAC CTGGACCGGC CCGGGGCGTG CGGCCGCCCG
CTGCCGGGCA CCGAGGTCGT CGTGGTCGAC GACGACGGCG CGGCCCTGCC CGCGGGCGAG
GTCGGCGAGT TCGTGGTCCG GGGACCGCAT GTGATGGCCG GGTACTGGCG ACGACCCGAA
CTGACCGCCC GGCGCTTCCA CCGGGTCGAC GACCTGTTCG TCGAACTGCG CTCCGGCGAC
TACGGATACC TCGACGAGGA CGGGTACCTG TACTTCGTCG GGCGGCGGGA CGACATCTAC
AAGTCGCGCG GGTTCCGGGT CAGTGCCACC GAGGTCGAGG CGGCCGCGCT GCGGGTGCCC
GGAGTGACCG CGGCGGCCGT CCTCGCGCCC ACCGCCCAGC ACCCCGAACC GGTGCTGTTC
GCGGTGACCG ACCTGGATCA GCCCACCTTC CACGCCCGGC TCCGGGAGCA GCTCGAGCAG
TACAAGATCC CGCGGCACTG CGAGCTCGTG GACGCGTTGC CGCTCACCCA GAACGGAAAG
ACCGACAAGA AGGCCCTGGC CTCCCGCGCG GAGGCCGGCC GGCTGATCGC CTGA
|
|---|
| Protein sequence | MEPTLLSDLL DAAAARQPQA PALTAGDRTD SYLDLATESR RAAGWLAARG IGRRDRVVVL
AQDHRLQVPV LFGCARIGAI FVLLHEDLAD PTVRHVLADT APTLLITDRP DAAAQAQRLG
VPVVSAAQTR DGIAAAPPAD PPRPLSVDPA CLIYTSGSTG MPNAVVSTHA QMVFAARAIQ
SQLGYRPDDV VFCPLPLSFD YGLYQVFLAA LGGAQLHLGS AQDAGLGLLR RLRTVGATVM
PALPSLAAIL ARLLERYGGT VDLRLITNTG AAMPASTIAR LRRLLPDVRI QLMFGLTECK
RVSIMPPDGD LDRPGACGRP LPGTEVVVVD DDGAALPAGE VGEFVVRGPH VMAGYWRRPE
LTARRFHRVD DLFVELRSGD YGYLDEDGYL YFVGRRDDIY KSRGFRVSAT EVEAAALRVP
GVTAAAVLAP TAQHPEPVLF AVTDLDQPTF HARLREQLEQ YKIPRHCELV DALPLTQNGK
TDKKALASRA EAGRLIA
|
|---|
| |