| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3728 |
|---|
| Symbol | |
|---|
| ID | 8449347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 4086094 |
|---|
| End bp | 4088994 |
|---|
| Gene Length | 2901 bp |
|---|
| Protein Length | 966 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645042783 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_003203019 |
|---|
| Protein GI | 258653863 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0224472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.621627 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGT CAACGAGGCC GCATGGGGGA GCCCCCGAGC AGGTCGCATC GGTCCTGCTG
CCACCCGCCG ACCCGACTCT GCTCGATGCG CTGCAGCGGG CGCTGCCGGA GCCGGGACAG
CTGCGCACCC GCGCGCTGGA CCGATTGGCC CTGGGTCACG ACGCCTCGCA CTACTTCCTC
ACCCCGACGG CCGTGGTCAC CCCCCGTGAC GCCGACGACG TCGGCCGGCT CTTCGAGGTC
TCCGCGGCGC GCGGGGTGCC GTTGACGTTC CGGTCCGGCG GCACCAGCCT GTCCGGCCAG
GCCGGCACTG CCGGCATCCT GGCTGACACC CGCAAGCACT TCCGGGGCAT CGACGTGCTG
GACGACGGCG CCCGGGTCCG GGTCGGTCCC GGTGCCACGG TGCGTCAGGT GAACGCTCGG
CTGGCCCGGT TCGGACGCAA GCTCGGGCCC GATCCGGCCA GCGAGATCGC CTGCACGATG
GGCGGTGTCG TCGCCAACAA CTCCAGCGGG ATGGCCTGCG GCACGACCCA GAACACCTAC
CAGACCCTGG AGTCGCTGGT CCTGGTGCTG CCCAGCGGCA CCGTCCTCGA CACCGGCGCG
GCCGACGCCG ACGAGAAGCT GCGGTCGACC GAGCCGGCGC TGTACGAAGG GCTGGCCCGG
CTGCGGGGCC GGGTCCGCGG CAACACCGAG TCGCTGCGCA TCATCGCGGC CCAGTTCGCG
ATGAAGAACA CCATGGGATA CGGGCTGAAC TCGCTGGTCG ACCACACCCG GCCGGTGGAC
ATCCTGACCC ACCTGGTGAT CGGCAGCGAG GGCACGCTGG CGTTCGTCGC CTCCGCGATG
TTCCGCACCG TGCCGCTGCT GCGGCACGCG ATGACCGGGC TGCTGGTGTT CGAGGACCTG
TCCGGCGCCA CCGGGTCGCT GCCCGCCCTG GTGTCCACCG GGCCGGCCAC TATCGAACTG
CTCGACGCGA CGTCGCTGCG GGTGGCCCAA GCAGATCCGG GCTGTGACGA GATCATCCGG
CGGATCACCG TGGACCGGCA TTCCGCACTG CTGGTCGAGT ACCAGGCCGA CTCGATCGAG
GCCGTCAGCG AATTGTCACA GGCCGCCGGC CCGGTGTTGC GGTCGATCCC GGTCACCGGT
CCGGCCGAGC TGACCGCCGA CCCCAGGGCC AGGGCCCGGC TCTGGCACAC CCGCAAGGGC
CTGTACACCA CGGTGAACGA GGCCCGGCCA TCCGGCACGA CTGCGCTGCT GGAGGACATC
GTCGTCCCGG TCCCGAAGCT GCTGGACACC TGCGAGCAGC TGATCGACCT GTTCGCCAAG
CACAGGTATA CCGACAGCGT GATCTTCGGG CACGCCAAGG ACGGCAACAT CCACTTCATG
CTCACCGAGC GCCTCGGCGC CGGGGGAGAC CTGCAGCGAT TCGCCGAGTT CACCGAGGAC
ATGGTCGAGC TGGTGCTGGC CAACGGCGGC AACCTGAAGG CCGAGCACGG CACGGGCCGG
ATCATGGCGC CGTTCGTGCG CCGTCAGTAC GGCGACGAGC TGTACGAGGT GACCCGGGAG
ATCAAGCAGC TGTGCGACCC GGCCGGACTG CTCAACCCTG GCGTGATCAT CACCGACGAC
GACCAGGCCC ACCTGCGGGA CCTCAAGGTC ACCCCGACCG TCGAGCAGGA GGTGGACCGC
TGCGTGGAGT GCGGCTACTG CGAGCCGGTC TGCCCGAGCC GGGATCTGAC CACCACCCCG
CGCCAGCGGA TCGTGCTGCG CCGGGAAATG CAGCGGGCCC GGGAGGCCGG CGACACTGCC
CTGCTGGCCG AGCTCGAGCA GGAGTACGAC TACGACGGCG TGCAGACCTG CGCGGTCGAC
GGCATGTGCC AGACCGCCTG CCCGGTGTTG ATCAACACCG GTGACCTGGT GCGCCGGCTG
CGGGCCGAGT CGGTCGGCAA GGTCACCGCG AAGGGCTGGT CCTACGCGGC CAAGCACTGG
GCCGGCACCA CCAAGCTGGC CGGAACCGCG CTGTCGGTGG CCGAGAAGAC CCCGTCCATC
CTCATCACCG GGCCGAACGA GCTGGCCCGG ACGGTGATCG ACCCGGACAT TCTGCCGCTG
TACTCGCCGG AGCTGCCCGG CGGCGGCCGG CAGCGGCCCA AGGGCGGTGG CGACGAACCG
ACCGCCCCGA CGCCCACCGC GGTGGAAATC GTCTTCTTCA GCGCCTGTGT CGGCACCATG
TTCGGCCCGG CCGACGGGGG ACCGGGCGCC CGCGAGTCGT TCGTCCGGCT GTGCGAACGG
GCCGGCGTGT CGATCACCTA CCCGGCCGAC CTGCCCTCGC TGTGCTGCGG GACGCCGTGG
AAGTCCAAGG GCATCTCCGA CGGCTACCGG GTGATGCTCC GCAAGGTGTT GCCGCGGCTG
TGGGAGGCCT CCCGGCACGG CGAACTGCCG ATCGTCTGCG ACGCCTCGTC GTGCACCGAG
GGTCTGCGGC ACATGCTGCA GAGCGAACTC GCCGAGGGGC ACTTCCAGGG CCTGAAGATC
GTCGACGCGA CCGCGTTCGT CGCCGAGCAC GTGCTCCCCA AGCTCGACAT CAAGCGCCGG
AAGTCGGCGA TGGCGCTACA CCCGACCTGC TCGTCGACCC AGCTGGGTCT CAACGACACC
CTGAAGTCGG TCGGCGCATC GGTCGCCGAC TCGGTCACCG TGCCCGACAA CTGGGGCTGC
TGCGCCTACG CCGGCGACCG TGGCATGCTG CACCCGGAGC TGACCGAGTC GGCGACCAAG
GGCGAGGCAC TGGAGATCCG CCAAGGGAAC TTCGACGCCT ACGCCTCCTG CAACCGGACC
TGCGAGCTGG GCCTGACCCG ATCCACCGGC CACGAGTATC AGCACATCCT GGAGCTGGTG
GACTGGGCCA GCGCCCCCTG A
|
|---|
| Protein sequence | MSLSTRPHGG APEQVASVLL PPADPTLLDA LQRALPEPGQ LRTRALDRLA LGHDASHYFL
TPTAVVTPRD ADDVGRLFEV SAARGVPLTF RSGGTSLSGQ AGTAGILADT RKHFRGIDVL
DDGARVRVGP GATVRQVNAR LARFGRKLGP DPASEIACTM GGVVANNSSG MACGTTQNTY
QTLESLVLVL PSGTVLDTGA ADADEKLRST EPALYEGLAR LRGRVRGNTE SLRIIAAQFA
MKNTMGYGLN SLVDHTRPVD ILTHLVIGSE GTLAFVASAM FRTVPLLRHA MTGLLVFEDL
SGATGSLPAL VSTGPATIEL LDATSLRVAQ ADPGCDEIIR RITVDRHSAL LVEYQADSIE
AVSELSQAAG PVLRSIPVTG PAELTADPRA RARLWHTRKG LYTTVNEARP SGTTALLEDI
VVPVPKLLDT CEQLIDLFAK HRYTDSVIFG HAKDGNIHFM LTERLGAGGD LQRFAEFTED
MVELVLANGG NLKAEHGTGR IMAPFVRRQY GDELYEVTRE IKQLCDPAGL LNPGVIITDD
DQAHLRDLKV TPTVEQEVDR CVECGYCEPV CPSRDLTTTP RQRIVLRREM QRAREAGDTA
LLAELEQEYD YDGVQTCAVD GMCQTACPVL INTGDLVRRL RAESVGKVTA KGWSYAAKHW
AGTTKLAGTA LSVAEKTPSI LITGPNELAR TVIDPDILPL YSPELPGGGR QRPKGGGDEP
TAPTPTAVEI VFFSACVGTM FGPADGGPGA RESFVRLCER AGVSITYPAD LPSLCCGTPW
KSKGISDGYR VMLRKVLPRL WEASRHGELP IVCDASSCTE GLRHMLQSEL AEGHFQGLKI
VDATAFVAEH VLPKLDIKRR KSAMALHPTC SSTQLGLNDT LKSVGASVAD SVTVPDNWGC
CAYAGDRGML HPELTESATK GEALEIRQGN FDAYASCNRT CELGLTRSTG HEYQHILELV
DWASAP
|
|---|
| |