| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3337 |
|---|
| Symbol | |
|---|
| ID | 8448952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 3674683 |
|---|
| End bp | 3675981 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 645042414 |
|---|
| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003202654 |
|---|
| Protein GI | 258653498 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00156813 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0107915 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACCG GCGCGGCCGC TGCGGCCGGG GTCGCGGTGG CCAGGGCCCG GACGGAACTG
TCCGGCCGGG TCCTGGCCGT TACCCTGCGG GCGGTGGCCG ACGCCGACAT CGCCGAGGAG
GCGACCGCCG AGGCTTTCCT GTCGGCGGTC GAGACCTGGC CGCGGACCGG CGTTCCCGAG
TCGCCGGAGG CCTGGCTGAT CACCGTCGCC CGGCGCAAGG CCCTGGATCG GCTGCGCCGC
GACTCACTGG GTCGCCGGCT GGCCCTGCGG ATGCTGCCGC CGCAACCGCA CCCGGCCGCG
GACAGCGGCA TCGACGTCGG GGTCATCGGG GACGAGGAAC TGCGCCTGGT GGTGCTGTGC
GCCGATCCCC GGCTGCCCGA GTCCGATCAG ATCGCGCTCA CCCTCAAATG GGCGTGCGGG
GCCAGCACGG CGGCCATCGC GGCGGCCCAC CTGGTCAGCA CGCCGACGAT GGCGGCCCGG
CTGACCCGGG CCCGCAAGAA GCTGGCCGCG GCCGGTCCGC GGCTGGACCT GCCGGACGAC
GCGACGGTCG ACGCGCGGCT GCCGGCGGTC TGCCGCGTGC TGCACTTGGC CTACACCCTG
GGTCACACGG CGGCCGACGG CGCCGAGCTG ACCGACGAGG ACCTGACCGG CCGGGCCGTG
CACCTGACCC GCACGTTGCA CCGGCAGCGC CCCAAGGACG CCGAGATCAC CGGTCTGCTC
GCGCTGGTGC TGCTCGGCCA GGCCCGGTCG AGCAGCCGCA TCGTCGACGG CCGGCAGGTG
CTGCTGGCCG ACGCGGACCG CACGGCCTGG GACCGAGCGC TGGCGGACGA GGGCCTGGCC
CTGTCCGAGC TGGCCCTGGC CCAGGGCATC GTGGCCGGCG CCCGGCCCGG GCCGCTGGCG
TTGCAGGCGG CGATCTCGGC GGCGCACACC CGGGCGTCCT CGTTCGCCGA CACCGACTGG
CGGCTGATCG TGCAGCTCTA CGGCCTGCTG CTGACGGCCG AGCCCAGCCA CACGCACGCG
CTGGGCCGGT GCGTGGCGGT GTCCTACCTC TACGGTCCGC AGGTCGGGCT GGCCGACCTC
GACGGGGTGA TGGCGGACGG GGTCCTGAAC CGCTACCCGT ACGCCCATGC CGCCCGCGCC
CAGCTGCTCG AGCGGGCCGG CCGGCCCGAG GACGCCGTGC GGGCCTGGCA GGCGGCGGCC
GCGACCGGGC GCACCGACGC GGAACGGGCG TATTTCACCG AGCGGGCCGG GAACAGTCGC
GCCCCGGCCG TGGTTGCCAC TGAGCGTGAA TACTCCTGA
|
|---|
| Protein sequence | MSTGAAAAAG VAVARARTEL SGRVLAVTLR AVADADIAEE ATAEAFLSAV ETWPRTGVPE
SPEAWLITVA RRKALDRLRR DSLGRRLALR MLPPQPHPAA DSGIDVGVIG DEELRLVVLC
ADPRLPESDQ IALTLKWACG ASTAAIAAAH LVSTPTMAAR LTRARKKLAA AGPRLDLPDD
ATVDARLPAV CRVLHLAYTL GHTAADGAEL TDEDLTGRAV HLTRTLHRQR PKDAEITGLL
ALVLLGQARS SSRIVDGRQV LLADADRTAW DRALADEGLA LSELALAQGI VAGARPGPLA
LQAAISAAHT RASSFADTDW RLIVQLYGLL LTAEPSHTHA LGRCVAVSYL YGPQVGLADL
DGVMADGVLN RYPYAHAARA QLLERAGRPE DAVRAWQAAA ATGRTDAERA YFTERAGNSR
APAVVATERE YS
|
|---|
| |