| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3143 |
|---|
| Symbol | |
|---|
| ID | 8448757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 3460104 |
|---|
| End bp | 3461651 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645042224 |
|---|
| Product | signal recognition particle protein |
|---|
| Protein accession | YP_003202465 |
|---|
| Protein GI | 258653309 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00382292 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0900367 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGAAA CGCTGTCTGA CCGGCTGTCC GGTGTCTTCA CCAATCTGCG CGGCAAGGGT
CGGCTGACCC CGGCCGACGT CGACCGCACG TGCCGGGAGA TCCGGGTCGC GCTGCTGGAG
GCCGACGTTG CGCTCCCGGT GGTCCGTGCG TTCATCGCGC GGATCAAGGA GCGGGCCAAC
GGGGTGATCG TCTCGGCGGC CCTGAACCCG GCGCAGCAGA TCATCAAAAT CGTCAACGAG
GAACTCGTCG CGATCCTCGG CGGCGAGACT CGGCGGCTGA CCTACGCCAA GAATCCGCCG
ACGGTGATCA TGCTGGCCGG CCTGCAGGGC GCCGGCAAGA CCACCCTGGC CGGCAAGCTC
GCGCTCTGGC TCAAGGGGCA GGGGCACACC CCGCTGCTGG TCGCCTCCGA CCTGCAGCGC
CCCAACGCGG TCACCCAGCT GCAGATCGTC GGCGAGCAGG CCGGCGTGCA GGTCTTCGCG
CCCGAGCCCG GCAACGGGGT GGGCGACCCG GTCGCGGTGG CCCGGGCCGG TGTCGCCCAC
GCCAAGGTGC GGCTGCACGA CATCGTCATC GTGGACACCG CCGGCCGGCT GGGCGTGGAC
GCCGACATGA TGCAGCAGGC CGTGGACATC CGCGACGCCG TCCAGCCGCA GGAGATCCTG
TTCGTGCTCG ACGCGATGGT CGGCCAGGAC GCGGTCACCA CCGCGGAGGC CTTCCGCGAC
GGCGTCGGCT TCAACGGCGT GGTGCTGACC AAGCTCGACG GCGACGCCCG CGGTGGTGCC
GCGCTGTCCG TGCGGCACGT CACCGGGCAG CCGATCATGT TCGCCTCCAC CGGCGAGAAG
CTGGCCGATT TCGACGTCTT CCACCCGGAC CGGATGGCCT CCCGGATCCT GGGCATGGGC
GACATGCTGA CCCTGATCGA GCAGGCCGAG CAGCACTTCG AGGCCGACCA GGCCGAGGCG
ATGGCCGCCA AGATGGCGGG CAACGAGTTC ACCCTCGAGG ACTTCCTCGA GCAGATGATG
ATGATCCGCA AGATGGGCCC CATCGGCGGG CTGCTGGGCA TGCTGCCCGG GGCCGGCCAG
ATGAAGGACG CCCTGGCCAA CGTCGACGAC CGCGACATCG ACCGCACCGC GGCCATCATC
CAGTCCATGA CGCCGGCCGA GCGGCAGGAC CCGAAGATCA TCAACGCCTC CCGCCGGCAG
CGCATCGCCC GGGGCTCGGG CTCGACCGTG TCCCAGGTCA ACGCGCTGGT GGAACGCTTC
TTCGAGGCGC GCAAGATGAT GTCCTCAATG GCCGGCCGGT TCGGCTTCCC GGGCGCCCGC
CCGTCCAACC GCAAGGCGGC CAAGGGCCGG CGCAAGTCGG GCAAGCGCAC GACCGGCCGC
GGCCCGACCC AGCCCAAGGT CAAGGGCATG CCGGGCGGTT TCCCCGGGAT GGGCGCCCTG
CCGCCGGGAA TGGGCGCGCC GGGGATGGGG GCACCCGGCG CGATGCCGGG GCTGGATCAG
TTCCCCGGTG ACTTCGATCC GACGAAGCTC AAGTTCCCCA AGCAGTGA
|
|---|
| Protein sequence | MFETLSDRLS GVFTNLRGKG RLTPADVDRT CREIRVALLE ADVALPVVRA FIARIKERAN
GVIVSAALNP AQQIIKIVNE ELVAILGGET RRLTYAKNPP TVIMLAGLQG AGKTTLAGKL
ALWLKGQGHT PLLVASDLQR PNAVTQLQIV GEQAGVQVFA PEPGNGVGDP VAVARAGVAH
AKVRLHDIVI VDTAGRLGVD ADMMQQAVDI RDAVQPQEIL FVLDAMVGQD AVTTAEAFRD
GVGFNGVVLT KLDGDARGGA ALSVRHVTGQ PIMFASTGEK LADFDVFHPD RMASRILGMG
DMLTLIEQAE QHFEADQAEA MAAKMAGNEF TLEDFLEQMM MIRKMGPIGG LLGMLPGAGQ
MKDALANVDD RDIDRTAAII QSMTPAERQD PKIINASRRQ RIARGSGSTV SQVNALVERF
FEARKMMSSM AGRFGFPGAR PSNRKAAKGR RKSGKRTTGR GPTQPKVKGM PGGFPGMGAL
PPGMGAPGMG APGAMPGLDQ FPGDFDPTKL KFPKQ
|
|---|
| |