Gene Namu_3115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_3115 
Symbol 
ID8448729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp3435931 
End bp3436941 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content76% 
IMG OID645042196 
Productintegrase family protein 
Protein accessionYP_003202437 
Protein GI258653281 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0082342 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.151412 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGCGCA CCTCGACCGC CGAGCTCCGG GACGGGTTGC CCGCGCCGTT GGTCCGCGAT 
CTCGAGCGCT ACCGGACGTT CCTGTCGGCC GAACGCAACC GGTCGCCCGC CACCGTCACC
GCCTACCTGG CCGACCTGGT CTCGCTGCTG GACCACCTGG GCCGGATGAC CGGGGACCGG
CCGGCGGAGC TGACCGACCT CACCCTGCCG GTGCTGCGCA GCTGGCTGGC CCGGCAGCGG
ACCACCGGCG CCGCCCGCGC GACGCTGGCC CGGCGGGCCG CCGCGGCCCG CTCGTTCTGC
GCCTGGGCCC ATCGCACCGG CCGGCTGCCG CAGGACGTCG GCGCCCGGCT GGCCGCGCCG
CGGGCGGACA AGACGCTGCC GGCGGTGCTG CGCGCCGATC AGGCCCACCA GATGCTCGAC
GCTCCGGCGG TCTCCGCCCC GGACCAGTCG CCGGACACCG GCACCGGCAC CGGCACTGGC
ACTGGCACCA GCGCCGTCGA GCAGGCCATG GCCCGGCGCG ACCAGGCGAT CCTGGAACTG
CTCTACGCCT CCGGGATCCG GGTGTCCGAG CTGACCGGGC TGAACCTGGA CGCGATCGAT
CGGCACCGAC GGGTCATCCG GGTGCTGGGC AAGGGCAACA AGCAGCGGAC CGTGCCATTC
GGGCTGCCCG CCGACCGGGC CCTGGGGGAC TGGCTGGATC GGGGGCGACC GGTGCTGGCC
GACGACGAGT CGGGCGCCGC GGTGTTCCTG GGCCGGCGGG GCCGGCGGAT CGACCCGCGG
GCGGTGCGCA CCCTCGTGCA CCGGCGCACC GCCGCCGTCG ACGGGGCTCC GGAGATCGCC
CCGCACGGCC TGCGGCACAC CGCGGCCACC CACCTGCTGG AGGGCGGCGC GGACCTGCGG
ACCGTGCAGG AGCTGCTCGG CCACGCCAGC CTGGCCACCA CGCAGATCTA CACCCACGTG
TCCACCGAGC GGCTGGCCGC GATCTACCGG CAGGCTCATC CGCGGGCGTG A
 
Protein sequence
MVRTSTAELR DGLPAPLVRD LERYRTFLSA ERNRSPATVT AYLADLVSLL DHLGRMTGDR 
PAELTDLTLP VLRSWLARQR TTGAARATLA RRAAAARSFC AWAHRTGRLP QDVGARLAAP
RADKTLPAVL RADQAHQMLD APAVSAPDQS PDTGTGTGTG TGTSAVEQAM ARRDQAILEL
LYASGIRVSE LTGLNLDAID RHRRVIRVLG KGNKQRTVPF GLPADRALGD WLDRGRPVLA
DDESGAAVFL GRRGRRIDPR AVRTLVHRRT AAVDGAPEIA PHGLRHTAAT HLLEGGADLR
TVQELLGHAS LATTQIYTHV STERLAAIYR QAHPRA