| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_3054 |
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| Symbol | |
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| ID | 8448667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | - |
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| Start bp | 3363382 |
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| End bp | 3365049 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 645042137 |
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| Product | CRISPR-associated protein, Cse1 family |
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| Protein accession | YP_003202379 |
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| Protein GI | 258653223 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.044999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000092711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGCGCA CCTTCAACGT GATTGACGAA CCGGTCCTGC CGGCTGTTTG GCTCGACGGG
ACCTCCGCTG ACATATCGAT CCGCCAGGCG CTCATCGATG CGCATCGGAT CGCGGCAATC
GAAGGTGAGC CGGCGTCTAT GACGTTCGCG CTGCACCGCT TGCTGCTAGC GATCGTCTAC
CGGGCGCTGC CGGTGGAACG CCCGCGGCAG GAATGGCGAG AGCTCTGGGA CGCGCCGGAA
CTGCCCGCCG AGGATCTCAA TTCCTACCTC GACGATTGGT ACCAACGCTT CGACCTGCTC
GATCCGGCGC AGCCCTGGCT GCAGGTGGCC GGACTGCATA CGACGCGCAG TGAATTCAGT
GAGCTCGAAA AGCTGATTCC CGATATTCCC AACGGTGAGC AGTTCTTCAC GGTGCGAGCC
GGTCTGGCGG CTCGGTCCAT TTCGCTGGCG GAGGCTGCGC GATATCTCAT CCACGCGCAG
GCTTTCGACC CCTCGGGCAT CAAGTCGGGG GCCGTGGGGG ACCCGCGGGT GAAGGGGGGC
AAGGGTTATC CGATCGGCAC CGCCTGGGCC GGCAACCTGG GTGGCGTCCT GGTCCAGGGG
CGCACGCTCA AGGAGACTTT GCTGCTCAAC CTGACTCTCG GCTCTCCGAA CGATGACGAT
CGGCCGTGGT CAGGCGAGGA GGATCAGCCG GTCTGGGAAC GCGAGCCGCT GACCGCCGCC
GAGGAATTCC CCGGGGAGAC GACCGGAGAT ATCCCCGGTC GAGCGCCCCG GGGGCCGGCC
GATCTATTGA CCTGGCCGAG TCGGCGGATG CGGTTGCGGG TGGAGGCCGA CCGGGTCACC
GGAGTGCTCA TCGCCAACGG GGACGTCCTG TGGCCGCAGA ATCGGCATGC CTGGGAGCCC
ATGACGGCCT GGCGGCGAAG CGATCCGCAG TCCAAGAAGT ATAAGACCAC CGTCTACATG
CCGCGCCAGC ACGATGCCGA CCGCAGCTTC TGGCGCGGCG CCGGGGCGGT GCTGCCGCGA
GCCGACCGAA GTCACCACAC CGTCGACGGG GAAACCGGTC TGCCCGCCGC GTCTCTGCGC
TGGCTTCAGG GAGCGGTCGA CGACGTTCTT GGTCCGAACT TTGTCTTGCG CGCTCGGGCG
ATCAGCGTCA TCTATGGATC CAACAGCTCC GTGATCGACG CGGTCTACGA CGACACGATG
GTCGTTCCTG CGGCGGTGCT GGACCATCCG GATCTGCAGC AGGGCTTGAT CGACGCGATC
GCGCACACGG ATAAGGCGGT TCAGGCGTTG GGCGATCTCG GCCGCGACCT CGAACAGGCC
GCTGGTGGTG TCGGTGACGC GCTACGCGGG CGGGCACGGC AGTTGGGCTT CCATCGGTTG
GACGAGCCGT TCCGTCGCTG GATGGGGACG CTGGTCTCCG GTTCCAATCT CGATGCCGCC
GTCACGCAGT GGTTCGTCGT CGCTCGGCGC GATCTCGTGA GCATCGGTCT AGCCCTGATC
GACGCCGCCC CGCCCGAGGC CTGGACCGGT CGACCCGACC CCCGAAGACC CGACCGACGC
CTTGATGTCG TCTCCGCGGA GCGACGCTTC CATTGGAACC TGGCCGCCGC CCTGCCAACC
GCCCCGCCCG TCTCCGAGCC AACCGCAGAG TCAGGAGCAC GCCCATGA
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| Protein sequence | MTRTFNVIDE PVLPAVWLDG TSADISIRQA LIDAHRIAAI EGEPASMTFA LHRLLLAIVY
RALPVERPRQ EWRELWDAPE LPAEDLNSYL DDWYQRFDLL DPAQPWLQVA GLHTTRSEFS
ELEKLIPDIP NGEQFFTVRA GLAARSISLA EAARYLIHAQ AFDPSGIKSG AVGDPRVKGG
KGYPIGTAWA GNLGGVLVQG RTLKETLLLN LTLGSPNDDD RPWSGEEDQP VWEREPLTAA
EEFPGETTGD IPGRAPRGPA DLLTWPSRRM RLRVEADRVT GVLIANGDVL WPQNRHAWEP
MTAWRRSDPQ SKKYKTTVYM PRQHDADRSF WRGAGAVLPR ADRSHHTVDG ETGLPAASLR
WLQGAVDDVL GPNFVLRARA ISVIYGSNSS VIDAVYDDTM VVPAAVLDHP DLQQGLIDAI
AHTDKAVQAL GDLGRDLEQA AGGVGDALRG RARQLGFHRL DEPFRRWMGT LVSGSNLDAA
VTQWFVVARR DLVSIGLALI DAAPPEAWTG RPDPRRPDRR LDVVSAERRF HWNLAAALPT
APPVSEPTAE SGARP
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