Gene Namu_2996 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_2996 
Symbol 
ID8448609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp3287143 
End bp3288579 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content72% 
IMG OID645042080 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003202322 
Protein GI258653166 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.015101 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000683759 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAATCGAT CTCGACTGAC GTTGCTGGCG GTCTCGCTGG CCACGTTCAT GAGCTATCTG 
GACAACAACA TCGTCAACGT CGCCATCCCG GCGATCGAGC GTGACCTGCA CCTGACGACC
TCGGGGATGG AGTGGATCGT CAGCTCGTAC ATCCTGGTCT TCGCCGGGTT GCTGCTGGCC
GGGGGCCGGC TGGCCGACGT CTGGGGCCGC AAGCGGGTGT TCCTGATCGG CCTGTCGATC
TTCACCGTGG CCTCGCTGGC CGCCGGGCTG GCCGGCTCGG TCGACGTGCT GGTCGGCGCC
CGCACCGTCC AGGGACTGGG CGCCGCCCTG CTGACGCCGA CCACCCTGGC GATCATCTCC
GCCACGTTCG CCGAAGGTCG GCCGCGGGCC GCCGCGGTCG GGTTGTGGAG CGCCGTCGGC
GCCCTGGCGC TGGCCGTCGG TCCGCTCCTG GGCGGGGTGC TCTCGGAGTA CCTGAGCTGG
GGCTGGATCT TCCTGGTCAA CGTGCCGGTC GGCGTGGTGA CCCTGGTGCT CGGCGCCACC
GTCATCGCCG AGTCGCGGGA TGCGACCTCG CCGCGACGCT TCGACGTGCC CGGCATGCTG
ACGTCCTCGG CCGCCCTGTT CGCACTGACC TTCGCGCTGA TCGAAGGCCA CGACCGCGGC
TGGACCTCGC CGATGATCCT GGGCTGCTTC GCGGTGGCCG CCGCCCTCGG GGTGGCGTTC
GTGCTGGTGG AGCGCCGCTC CACCGAGCCG ATGGTGGCGA TGTCGCTGTT CCGCGAGCGG
GTGTTCACCG GGGGCATCGT GGCCCTGATG ATGTGGGCCT TCGGCCTGTT CGGCATCTAC
TTCTTCACCT CCCTGTACCT GCAGGGGGTG CTGGGTTTCA GCCCGACCGA GGCCGGCGCC
GCGTTCGTGC CGATGGCCCT GCTGATGGCC GCGGGAGCCG TGATCTCCGA ACGGGTCTCG
CACCGGATCG GCGCGGGTCG GGTGGTCCCG GTGGCCATGC TGATGATGGC CGCGGGCATC
GCCTCGGTCA GCCTGCTCGG TGCGGACGCC GGATTCTGGT CGTTGATGCC GGCCTTCGCG
GTGATCGGGA TCGGCGGCGG GCTGACCGTC CCGCTGACCG CCAGCGTGCT CGACGCGATG
CCCCGCGGCG AGGCGGGCGT GGCCTCCGGG ATCTTCAACG CCAGCCGCGA GGTCGCCGGG
CTGCTCGGCA TCACGGTGAT CGGGGCCGTG CTGACCGCGC GGCAGGCCAC CCTGCTGGCG
GCCGGGCAGG CGCCGGTCGA CGCGTTCCTG GGCGGCTACC GGACCGGTCT GTTCCTGGCC
GCCGCGCTGG TCGCGGCCGG TGCCGTGGCC GCGTTCGTCG GGTTGCGGGC GACCGCCCGC
CGGGCCGGCG CCCGGCCGGT GGAGTTGCCG ACCGAACCGG CCGTCCTCGC CGGGTGA
 
Protein sequence
MNRSRLTLLA VSLATFMSYL DNNIVNVAIP AIERDLHLTT SGMEWIVSSY ILVFAGLLLA 
GGRLADVWGR KRVFLIGLSI FTVASLAAGL AGSVDVLVGA RTVQGLGAAL LTPTTLAIIS
ATFAEGRPRA AAVGLWSAVG ALALAVGPLL GGVLSEYLSW GWIFLVNVPV GVVTLVLGAT
VIAESRDATS PRRFDVPGML TSSAALFALT FALIEGHDRG WTSPMILGCF AVAAALGVAF
VLVERRSTEP MVAMSLFRER VFTGGIVALM MWAFGLFGIY FFTSLYLQGV LGFSPTEAGA
AFVPMALLMA AGAVISERVS HRIGAGRVVP VAMLMMAAGI ASVSLLGADA GFWSLMPAFA
VIGIGGGLTV PLTASVLDAM PRGEAGVASG IFNASREVAG LLGITVIGAV LTARQATLLA
AGQAPVDAFL GGYRTGLFLA AALVAAGAVA AFVGLRATAR RAGARPVELP TEPAVLAG