Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_2981 |
Symbol | |
ID | 8448594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | - |
Start bp | 3267879 |
End bp | 3269501 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 645042065 |
Product | alpha amylase catalytic region |
Protein accession | YP_003202307 |
Protein GI | 258653151 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000000947876 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0148383 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCAA ACAGCCAGCC CGTGCCCGTC ACCGCCGCCG AGCCGTCGTG GTGGCGGTCG GCCGTGATCT ATCAGATCTA CCCGCGCAGC TTCGCCGACG GCAACGGTGA CGGCATCGGC GACCTGGCCG GCATCCGATC CCGGCTGCCG TACCTGGTCG ACCTGGGGGT CGACGCGATC TGGATCAGCC CGTTCTATCC CTCGCCGCAG GCCGACGCCG GGTACGACGT CGCCGACTAC CGCGACATCG ACCCGGTCTT CGGCACCCTG CCGGAGTTCT CCGACCTGGT CGCCGAATGT CACCGCGCGA ACGTGCGGGT GATCGTCGAT CTGGTGCCCA ACCACACCTC GGACCAGCAC GCCTGGTTCC AGGCCGCGCT GGCCGCCGGC CCGGGCAGCC CGGAGCGCGC TCGGTACCTG TTCCGGGAGG GTCGCGGCGC CAACGGCGAG CTGCCGCCCA ACAACTGGGT GTCCAACTTC GGCGGCCCGG CCTGGACCCG GGTGCCGGAC GGGCAGTGGT ACCTGCACCT GTTCGCCCCG CAGCAGCCCG ACCTGGACTG GACCAACCCG GAGGTCGTGG CCGAGTTCCA CGACATCCTG CGCTTCTGGA TGAAGCTGGG CGTCGACGGC TTCCGCATCG ACGTCGCGCA CGGGCTGGCC AAGGACGCCG ACCTGGCCGA CCTGCCGGGC GGGGCCGAGG GGCACCTGCT GACCCCGGCC AACACCAACG ACCACCCGCA CTGGGACCGC GACGAGATCC ATGAGGTCTA CCGCGGCTGG CGCGCGGTCG TCGACGAGTT CGGCGGGGAC CGGGTGTTCT GCGCCGAGGC GTACGTGCCC AACCCGCAGC GCTTCGCCGA CTACGTGCGG CCCGACGAGC TGCACACCGC CTTCAACTTC GACTTCCTGC AGGCCACCTG GGACGCCGCC GACTACCGCC GGGTCATCGA CGAGACGATG GCCAACCTGC GGGCGGTCGG CGCGCCGGCC ACCTGGGTGC TGTCCAACCA CGACGTGGTC CGGCACCCGA CCCGCTTCGG CGGCGGCCAG CTCGGCCTGG ACCGGGCCCG CGCCGGCACC CTGCTGATGT TCGCCCTGCC CGGCGGGGCC TACGTCTACC AGGGCGAGGA GCTCGGCCTG CCCGAGGTTC TGGATATCCC CGCGCAGTGG CGCCAGGACC CGATCTTCTT CCGCTCCGGC GGGGAGCGGC TGGGCCGCGA CGGCTGCCGG GTGCCGCTGC CCTGGTCGGA CACGCAGGCG CCGTACGGGT TCGGCCCGGC CGGCACCCCA TGGCTGCCGC AGCGGCCGGT CTTCGGCGAG CTGTCCGTGC AGGCCCAGAC CGGCGACCCG GCGTCGACCC TGGAGTTCTA CCGGCGGGCC CTGCGCATCC GCCGCGAGCG GCCTGAGCTC GGCGACGGTC CCATGCAGTG GCTGGACGCC CCCGACGGCA TGCTCGTGCT GGCCCGCGGC CAGTTCCGGT GCGCGATCAA CTTCACCGAC GAGCCGCTGC CGCTGCCGCC GTCCTGCGCC GGCGCGACCC TGCTGCTGAG CAGTTCGGCG ACCGCCGATC AGGGGTTGGC AGAGCTCGGC GGCAACACCG CCGCGTGGTT CCTGGCCGGC TGA
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Protein sequence | MSANSQPVPV TAAEPSWWRS AVIYQIYPRS FADGNGDGIG DLAGIRSRLP YLVDLGVDAI WISPFYPSPQ ADAGYDVADY RDIDPVFGTL PEFSDLVAEC HRANVRVIVD LVPNHTSDQH AWFQAALAAG PGSPERARYL FREGRGANGE LPPNNWVSNF GGPAWTRVPD GQWYLHLFAP QQPDLDWTNP EVVAEFHDIL RFWMKLGVDG FRIDVAHGLA KDADLADLPG GAEGHLLTPA NTNDHPHWDR DEIHEVYRGW RAVVDEFGGD RVFCAEAYVP NPQRFADYVR PDELHTAFNF DFLQATWDAA DYRRVIDETM ANLRAVGAPA TWVLSNHDVV RHPTRFGGGQ LGLDRARAGT LLMFALPGGA YVYQGEELGL PEVLDIPAQW RQDPIFFRSG GERLGRDGCR VPLPWSDTQA PYGFGPAGTP WLPQRPVFGE LSVQAQTGDP ASTLEFYRRA LRIRRERPEL GDGPMQWLDA PDGMLVLARG QFRCAINFTD EPLPLPPSCA GATLLLSSSA TADQGLAELG GNTAAWFLAG
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