| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2156 |
|---|
| Symbol | |
|---|
| ID | 8447767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2377266 |
|---|
| End bp | 2377907 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645041279 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003201523 |
|---|
| Protein GI | 258652367 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.00144154 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00375901 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC GCCGGCCGTT GCACCGGCGA ACGAACCCGG AGGTGGTTTT CCTGTCCAGC
GTCCCCGTCT CGACCGGCCC CGTGTGGACC CCGCCGGCCT GGGACGAGAT CGTCCGTGAC
CACGGTGATC GCGTATACCG GCTGGCCTAC CGACTGTCCG GGAACGCCCA CGACGCCGAG
GACATCACCC AGGAGACCTT CATCCGGGTG TTCCGCTCGT TGGCCAGTTT CCAGCCGGGC
TCCTTCGAGG GTTGGCTGCA CCGCATCACC ACCAACGTCT TTCTGGACAT GGTCCGACGC
CGCCAGCGGA TCCGGATGGA GGCGCTGCCC GAGGAGACCG ACCGCATCGC CGGCCGCGAA
CCCTCGCCGG AGCAGGCCTT CAGCGATGCC CATCTGGACC CCGACCTGCA GGCCGCGCTG
GACGATCTGC TGCCCGAGTT CCGCGCGGCC GTGGTGCTGT GCGACGTCGA GGGGCTGACG
TACGAAGAAA TCGGTGCCAC TCTCGGAGTC AAGCTCGGCA CGGTGCGCTC CCGGATCCAC
CGCGGGCGGC TGGCCCTGCG GGCCGGCCTG GAACGTCGGC GGGCAGCGCG CGGTGCGGCA
GCGGACACAG GCGGACACGA CGGTGTGGAG GCGGTGCGGT GA
|
|---|
| Protein sequence | MIERRPLHRR TNPEVVFLSS VPVSTGPVWT PPAWDEIVRD HGDRVYRLAY RLSGNAHDAE
DITQETFIRV FRSLASFQPG SFEGWLHRIT TNVFLDMVRR RQRIRMEALP EETDRIAGRE
PSPEQAFSDA HLDPDLQAAL DDLLPEFRAA VVLCDVEGLT YEEIGATLGV KLGTVRSRIH
RGRLALRAGL ERRRAARGAA ADTGGHDGVE AVR
|
|---|
| |