Gene Namu_2111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_2111 
Symbol 
ID8447722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp2329348 
End bp2330151 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content65% 
IMG OID645041234 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003201478 
Protein GI258652322 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.00668393 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.136098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACCA CCCGCCTCGC CGGCAAGAAC GTGCTCATCA CCGGTGGCGC ACAGGGCATG 
GGCGCCGCCG TCGCCCACTA CTACGCCGAG CAGGGCGCCA AGGTGTGCGT GGGGGACGTC
AACGTGGACG GCGTCGCCCA GGTCGCGGAT GAGATCACCG CCAAGGGCGG CACGGCCACC
TTCGTCAAGC TCGACGTGAC CAGCGAGCAG GACGCGGCTG CCGCCGTCGC GCACACGGTC
GAACAGTTCG GCAGCATCAA CGTGCTGCTG AACAACGCGG GCATCAACAA GCCCTTGTTC
TTCCTCGACA TCACCCGCGA GAACTGGCAG CGCATCATGG ATGTCAACGC CTGGGGGACG
ATGAACTGCA TGCAGGCGGC GGCCCGCCAG ATGAAGGCGC AGGGCCGGCA GGACTACCCC
TACAAGATCA TCAACGTCGG TTCGATCCTG TCCCGGGACG TCTTTGACGA CGTGGTTGTC
TACGGCGCGT CCAAGCATGC GGTGCTGGCC CTGATCAAGG GCGGGGCCAA GGCGCTGATC
GAACACAACA TCACCGTCAA CGGGTACGGC CCGGGGGTGG TGCGCACGGA GCTGTGGGAG
CAACTGGACA AGGACCTGGT GGCGATCGGC AAGTTCGACG CGCCGGGTAA GTCCATGGAC
CAGCTGGCCG AGACGATGAT CTTGATGAAG CGCTACTCCT ACCCCAAGGA CGTCGTGGGC
ACGGCGGCCT TCCTGGCCAG CCCGGAGAGC GACTACATGA CCGGTCAGCT GCTGATGATC
GACGGCGGCA TGGTGATCCA GTGA
 
Protein sequence
MDTTRLAGKN VLITGGAQGM GAAVAHYYAE QGAKVCVGDV NVDGVAQVAD EITAKGGTAT 
FVKLDVTSEQ DAAAAVAHTV EQFGSINVLL NNAGINKPLF FLDITRENWQ RIMDVNAWGT
MNCMQAAARQ MKAQGRQDYP YKIINVGSIL SRDVFDDVVV YGASKHAVLA LIKGGAKALI
EHNITVNGYG PGVVRTELWE QLDKDLVAIG KFDAPGKSMD QLAETMILMK RYSYPKDVVG
TAAFLASPES DYMTGQLLMI DGGMVIQ