| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2052 |
|---|
| Symbol | |
|---|
| ID | 8447661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 2264605 |
|---|
| End bp | 2265894 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 645041175 |
|---|
| Product | putative transcriptional regulator, PucR family |
|---|
| Protein accession | YP_003201421 |
|---|
| Protein GI | 258652265 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2508] Regulator of polyketide synthase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.171524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00281905 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCCG AGGGTTCGCT GGACAGCCCG GCCGCGGCCG ACCCCGGCCC CGGCCCGGCC
ATCGACCCCG CTCGCCTGCC CGGCCCGACG CCCTCGTCGG TGCTGCGGGC GGTCTACTCC
GCGCTCGGCG GCCCGCCGGC CGCGGTGCAC GGGGTCAGCG AGGAGACGCT GCACCGGGTC
GAGCGGGCCG GTGGGCAACT CGCCCGGCGG GCCCTGTCGC TGATGGACCA GCGACTGCCC
TGGTTCCGCT CGTTGCCGGC CGAGCAGCGG TCCTGGGTCA CCCTGGTCGC CCAGGCCGGC
ATCTCCGGCT ACGTCGTCTG GGCACAGGCC AGCAGCGACG AGTACCGGAT CACCGGGGAG
GTGTTCGGCA CCGCCCCCCG TGAGCTGGTC CGCGCGGTGT CCCTGCGCCG CACGGTGGAG
CTGGTCCGGG TGGCCATCAC CGTCGCCGAG CAGGACCTGC CCGCGCTGGC CGCGGATGAC
GCCGAGCGGA TCGCGCTGCG CGACTCGCTG CTGCGCTACA GCCGGGAGAT CGCCTTCGCC
GCGGCCGAGG TGTACGCGGC GGCGGCCGAG ACCCGTGGCG CGTGGGACGC GCGGGTAGAG
GCGGCGGTCG TCGACGGGGT GGTCCGCGGC GAGGACATCG GCACCCTGTC CTCCCGGGCC
GCCGCGCTGA ACTGGGATCC CACCGCCGAC ACGGTCGTCG TCGCCGGGGC CGCCCCGACC
GGCGACCGGG CCGACGCGGT GGCCGCGGTC ACCGACTGGG CCGCCGTCAG CGGACGGCCG
GCGATGGCCG GTGTGCACGG CGATCGCCTG GTGCTGGTGC TGGCTGGGGC CGAGCCGCCG
GCGGACACCG TCGCCCAGCT GTTCGGCGAG GGTCCGGTGG TCCGTGGCCG CCCCGGCAGC
GGCCTGCGCG CCGCGATCAA CTCCGCCGCC GACGCCCTGG CCGGCCTGGA CGTGGTCGCC
GCCTGGCCGG ACGCCCCGCG GATGATCGAC GCCGACGACC TGCTGGTCGA GCGGGTGCTG
GCCGGCGACG CCCAGGCCGC GGCCCGGTTG CGCGCCGCCG TCTACGCCCC CCTGGCCGCC
TCCCCGCACC TGCTCTCGAC GGTGGACGCC TACCTGGCCA CCGGCGGCGC CCTGGAGCCC
ACCGCCCGCA ACCTGTTCGT CCACCCCAAC ACCGTCCGCT ACCGCCTGCA CCGCGTCGCC
GACCTGACCG GACGCGACCC CTGGGAGCCC CGGGACCTGC TGGTCCTGCA GACCGCGGTC
ATCCTCGGCC GGCTGGCCGC CGCCCCCTGA
|
|---|
| Protein sequence | MTAEGSLDSP AAADPGPGPA IDPARLPGPT PSSVLRAVYS ALGGPPAAVH GVSEETLHRV
ERAGGQLARR ALSLMDQRLP WFRSLPAEQR SWVTLVAQAG ISGYVVWAQA SSDEYRITGE
VFGTAPRELV RAVSLRRTVE LVRVAITVAE QDLPALAADD AERIALRDSL LRYSREIAFA
AAEVYAAAAE TRGAWDARVE AAVVDGVVRG EDIGTLSSRA AALNWDPTAD TVVVAGAAPT
GDRADAVAAV TDWAAVSGRP AMAGVHGDRL VLVLAGAEPP ADTVAQLFGE GPVVRGRPGS
GLRAAINSAA DALAGLDVVA AWPDAPRMID ADDLLVERVL AGDAQAAARL RAAVYAPLAA
SPHLLSTVDA YLATGGALEP TARNLFVHPN TVRYRLHRVA DLTGRDPWEP RDLLVLQTAV
ILGRLAAAP
|
|---|
| |