| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_2015 |
|---|
| Symbol | |
|---|
| ID | 8447624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 2224084 |
|---|
| End bp | 2226708 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 645041141 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003201387 |
|---|
| Protein GI | 258652231 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00847604 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAGC TCCTCGCACC AGGTGTAGAC GCCCAGCGTG GCGACACCGA CGGTGTCGAA
CCCGATGGTG TCACCGTCGA TGGTGACACC GACGGTGGTG ACACCGACGG CGCCGTCCTG
GTAGTGCGGG CCGGCGACGT CGCCGCCGTG CGCCGATCGT CGCCCGATAG TGCCATTGTG
GCCCTCGTCC GGTCGACCGA GCCGGCCGCG GCGATCGCCG CCCAGTTGGC CGGCGCTGAC
CTCGTGCTGC CCTGGACCGA CGAAACCCCG CCCCGCGAAG CCGATCTCGC TGCGGCTCGG
GTGGCCGCGC GGCTGCTCGC CGGGCGGGCG CGGGGGGTCC GCAGGCAGAC CCGGGAAGCC
GCGCACGAGG TCGCCGGCCA GGCCGGCGCG CTCACCCTGC TGGCCGAGCT GCTCGGCCCC
GATCAGCCGC CCACCCGCGC CGAGCAGCTG CGCCGGCTCG CCGCCCGCGG CGCGCAGCTG
GCCTGGCAGG CCGGCCGGGT GGCCCGCACG GCCGGGGCCG TGGTCGAGCG GGTGGACGTC
GCGGCCGTGG TCCACGCGCT CGCCCGCACT GGGCCGGCCG AGCTCGACCT GCACGTCGAC
GCGCCCGCTC CGGTGGTCGC GCTGGTCGAT CAGGCGCGGC TGATCCGCTC GCTCGAGCAG
TTGATCGACA ACGCCCGCCG GGCCGGGGCC CGGCAGCTCA CGCTCCGGGT GAGCGGCCGG
CCCGGGCCGG CCGGGGTGCG TGTGCTGGTC GTGGACGACG GGCCCGGGCT TCCGGCGGGC
TGGACGTCGC AGACGGCGAC GACGCCGTTC GTCAGTGGCT GGGCCGAACC GGCGGACGGG
CTGGGGCTGG CCGAGGTCGC GGATTTCGCC GCCGACCACG GCGGCACGCT GCGGGTGACG
CCGCGGCCGG ACGCGGCCGG AGTCCGGGTG GAGCTGCGGC TGCCCGCGGC GGCCGACACC
GGGCCACACC CGGGCGAGGT GGTCCCGCCG CCGGCCGATG CCGATGGGGC GCTGGCCGGC
ATCCTGGAAG GGATCGCCCG CCGGGCCCCG CTGGCCGAGA GCCTCGAGGA CCTGGTCGCC
ACCATGGAGC GGCACCTGCC GGACAGCCGC TGCTCGATCC TGGTGCTGGA CCAGGACACC
CGAACCCTGC ACCACGGGGC CGGGGCGCGG CTGCCGGCGG CCTACCGGGC GGCCATCGAC
GGGTTGTCGA TCGGCCCGCA GGCCGGGTCC TGCGGCACGG CCGCGTTCAC CCGGCAGGAG
GTCGTCGTCG CCGACATCGC CACCGACCGA CGCTGGGCGG ACTACCGCGC GCAGGCCCTG
CCGCACGGCC TGCGCTCGTG CTGGTCGCGG CCGATCCTGG CGGTCGAACA AGGCGTGGTG
CTCGGCACTT TCGCGGTGTA TCACGCCGAG CCGTGGGTGC CCGATGAGTC GGCGATCGAG
CTGGTGCAGC GCCTGACCCA CGTGGCCGCC GTCGCCATCG GCACCGCCGC GTTGTACGGG
CAACTCGTGG AAAGCGAGGC CCGGTTCCGC AGCACCTTCG AGGCCGCCGG GCTGGGCATC
GCCCTGGTCG GACCGTCCGG CACCATCCAG GACGCCAACG CCGCGCTCAC CGCGATGGCC
GGACGCGATG TCGTCGGCCA GCGGCTGGTC GAGCTGCTCG ACCCGCGGGA CGCGGCCGGC
ACCGCCGACG CGCTGGCCGC GCTGCTGCGG CAGCCGGAGA CCGAGCAGCG GCTGGCCCCG
GCCGAGGTCC GGGTGCGCCG GGCCGGAGAG CCGGAGCCGC TGTGGGCGGC CCTGAGTGGC
TCGCTCATCC GCGGGTCGCA GAGCGAGCCC CGGCACTTCT GCATCGAGCT GTTCGACCTC
ACCGAACGGC GCCGGGTCGC CCAGGCCCGC CGGGCGCAGG CGGTCGCCCA GGCCGCCGAC
CGGGCCAAGA GCGAGCTGCT GGCCCTGGTC AGCCACGAGG TCCGCACCCC GCTCAACGCC
GTCATCGGGT TCGCCCAGGT GCTGCGCGGC CTGCCGCTCA CCCCCGAGCG GCAGTCGGCG
GCGGTCGAGC ACATCCTGGG CGCCGGCCGG CACCTGCTCC AGCTGATTAA CGATCTGATC
GACCTGACCG GAGCCGAAAC CCGACAATTG CAGCTGACTT TCGAGCCGCT ACCGGCCGGC
CCGGTGGTCG CCGAGGCGAT GCAGATCGTC GCCGGAATGG CCGAGGAACG CTCGATCGCG
CTGAGCTCGC GCGCGGTCGG CGCCGGGCCG GCGGTGTGGG CCGACCGGCA CCGGCTGCGG
CAGGTGCTGC TGAACCTGCT GGGCAACGCG ATCAAGTTCA CCCCGGCCGG CGGCCGGGTC
GAGGTGATCG TGGGCGACGG CGAGATCCTG GTCCGGGACA CCGGCGAGGG CATCGCGCCG
GATCAGGTGC CGTTGCTGTT CACGCCGTTC CATCGGGCCG GGACCAGCAG CGCCGAGGGA
TCGGGGCTGG GATTGGCGCT CTCGCAACGG CTGATGCGGG CCATGGGCGG CGAGCTGACC
CTGCTGAGCA CCGGCGCCGG GGGCAGCACG TTCATGGTGG TGCTGCCGGC GGCCGCGCCG
GCCGCGGTCA GCGACCGGCC CCGCTCGCCG GTGCCGGCGT CGTGA
|
|---|
| Protein sequence | MHKLLAPGVD AQRGDTDGVE PDGVTVDGDT DGGDTDGAVL VVRAGDVAAV RRSSPDSAIV
ALVRSTEPAA AIAAQLAGAD LVLPWTDETP PREADLAAAR VAARLLAGRA RGVRRQTREA
AHEVAGQAGA LTLLAELLGP DQPPTRAEQL RRLAARGAQL AWQAGRVART AGAVVERVDV
AAVVHALART GPAELDLHVD APAPVVALVD QARLIRSLEQ LIDNARRAGA RQLTLRVSGR
PGPAGVRVLV VDDGPGLPAG WTSQTATTPF VSGWAEPADG LGLAEVADFA ADHGGTLRVT
PRPDAAGVRV ELRLPAAADT GPHPGEVVPP PADADGALAG ILEGIARRAP LAESLEDLVA
TMERHLPDSR CSILVLDQDT RTLHHGAGAR LPAAYRAAID GLSIGPQAGS CGTAAFTRQE
VVVADIATDR RWADYRAQAL PHGLRSCWSR PILAVEQGVV LGTFAVYHAE PWVPDESAIE
LVQRLTHVAA VAIGTAALYG QLVESEARFR STFEAAGLGI ALVGPSGTIQ DANAALTAMA
GRDVVGQRLV ELLDPRDAAG TADALAALLR QPETEQRLAP AEVRVRRAGE PEPLWAALSG
SLIRGSQSEP RHFCIELFDL TERRRVAQAR RAQAVAQAAD RAKSELLALV SHEVRTPLNA
VIGFAQVLRG LPLTPERQSA AVEHILGAGR HLLQLINDLI DLTGAETRQL QLTFEPLPAG
PVVAEAMQIV AGMAEERSIA LSSRAVGAGP AVWADRHRLR QVLLNLLGNA IKFTPAGGRV
EVIVGDGEIL VRDTGEGIAP DQVPLLFTPF HRAGTSSAEG SGLGLALSQR LMRAMGGELT
LLSTGAGGST FMVVLPAAAP AAVSDRPRSP VPAS
|
|---|
| |