| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_1966 |
|---|
| Symbol | |
|---|
| ID | 8447575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 2172612 |
|---|
| End bp | 2173931 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645041096 |
|---|
| Product | transposase IS204/IS1001/IS1096/IS1165 family protein |
|---|
| Protein accession | YP_003201342 |
|---|
| Protein GI | 258652186 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3464] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0415277 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0178041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA GTAGTTCGCT GCTGTTGGAC ATCGACGGGC TGGTCGTCGA CCAGGTCGTC
CGCGACGACG TCGGCCGACG GGTCGTGCAC TGCTCGACCG ACCCGCAGCT GGCCGGCTGG
TGCCCGGAGT GCGGTGAGCA GTCGAGGTCG CCGAAGGCGT GGGTGACGAC CCGCCCGCGG
GACGTCCGGC TGGGCGAGGA TCGGCCGATC CTGTTGTGGC GCAAACGCAA ATGGCGCTGC
CAGGTCGACG GCTGCGAGCG GAAGGTGTTC ACCGAGTGCC TGCCCGAGCA GATCCCCGCC
CGGGCCCGGA TCACCACCCG GGCCCGCCGA CTGGCGGCCG AGGCGATCGG CGACCACACC
CGGCCGGTGT CCGGTGTGGC GGCCGAATTC GGCATGGACT GGCGCGTTGC GCACGACGCG
TTCGTCGCGC ACGCCGCGCA GGTGTTGCCC GAGCAGCCGC CGCCGGTGAC CGTGCTGGGC
GTCGACGAGA CCCGCCGCGG CAAGGCCCAC TACGAGACCG ACCCCACCAC CGGGGCGAAG
ACCTGGGTGG ACCGCTTCGA CACCGGCCTG GTCGATCTGA GCGGCAACGG CGGGCTGTTC
GCGCAGGTCA ACGGCCGCAC CAGCAAGGTC CTCATCGAGT GGCTGCAGGC GCAGGACCCG
GACTGGCTCG CCAACATCAC CCACATCTCG ATGGACACCA GCGCGACCTA CGCCCGGGCC
GCCCGGCTGG CCCTGCCCGA TGCTGTCGTG GTCGTGGACC GGTTCCATCT GTCCGCCCTG
GCCAACAAGG CGGTCACCGA CTACCGGCGG GAGTTGGCCT GGGCGCTGCG TGGCCGGCGG
GGCCGCAAGA GCGACCCGGA GTGGGCGCAA CGGAACCGGC TGCTGCGGGC CGCGGAGTCC
CTGACCGACG ACGAGCTGGC CAAGGTGCAG GATGCGATGC GTCGGGCGGA CCCGTCCGGC
GGCCTTGAGA AGTGCTGGCA GGGCAAGGAA CTGCTCCGCA AGCTGCTCAA GCTGGCTGGC
ACGAACCCGG ACCGCGGACG GATCTTCAAC GCGCTGACCG CGTTCTATCT GCATTGCGCC
GACTCCGGGG TCGCGCAGCT GCGGCGGCTG GCGTGGACGG TGCATGCCTG GCAGAACTCG
ATCATCGCCG GGCTGCACAC CGGGATCAGC AACGGCCGCA CCGAGGGCTA CAACCGGATC
GTCAAACACA TCGGCCGGAT CGCCTTCGGC TTCCGCAACC AGGACAACCA GAAGCGCCGG
GTACGCTACG CCTGCACCCG GAAATCCCGG GCGTCAACCA GCCACGCGAA GCCCTGCTAA
|
|---|
| Protein sequence | MDQSSSLLLD IDGLVVDQVV RDDVGRRVVH CSTDPQLAGW CPECGEQSRS PKAWVTTRPR
DVRLGEDRPI LLWRKRKWRC QVDGCERKVF TECLPEQIPA RARITTRARR LAAEAIGDHT
RPVSGVAAEF GMDWRVAHDA FVAHAAQVLP EQPPPVTVLG VDETRRGKAH YETDPTTGAK
TWVDRFDTGL VDLSGNGGLF AQVNGRTSKV LIEWLQAQDP DWLANITHIS MDTSATYARA
ARLALPDAVV VVDRFHLSAL ANKAVTDYRR ELAWALRGRR GRKSDPEWAQ RNRLLRAAES
LTDDELAKVQ DAMRRADPSG GLEKCWQGKE LLRKLLKLAG TNPDRGRIFN ALTAFYLHCA
DSGVAQLRRL AWTVHAWQNS IIAGLHTGIS NGRTEGYNRI VKHIGRIAFG FRNQDNQKRR
VRYACTRKSR ASTSHAKPC
|
|---|
| |