Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Namu_1959 |
Symbol | |
ID | 8447568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nakamurella multipartita DSM 44233 |
Kingdom | Bacteria |
Replicon accession | NC_013235 |
Strand | - |
Start bp | 2155767 |
End bp | 2159462 |
Gene Length | 3696 bp |
Protein Length | 1231 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 645041091 |
Product | TrwC relaxase |
Protein accession | YP_003201337 |
Protein GI | 258652181 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00119811 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0194431 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTGT CGCGGATGGC GTCGGTCGAT TACTTGATCG ATCACGTCGC CGCCGGCGAC GGCCGCGCCG CCGACCCCAC CGCGTCGCCG TTGACGCGGT ACTACACGGC CCAGGGCTAC CCACCGGGCA CCTGGCTGGG CTCCGGAATC GCGGCGCTCG GGGCGGGCGG GATGGCCGGT TCCGAGGTGA CCGAGGCGCA ACTCCGCGAG ATGTTCGAGG GTGCCCGCAA CCCGTTCACC GGCGAGCGGC TGGGCCGGCC CCCGGCCAAG TATCCGACCC GACAGGAGCG GATCGACCTG CGCGTCGGCA AGCTCCCCGA CTCCCTCACC GCGCAGTCGC GGGCGGCACT GGTCGAGAAG ATCACCGCGG AGGAGAAGGA GACCAAGACC CGGACCGCCG TCGCCGGGTT CGACCTGACG TTCAGCGTGC CGAAGTCGGT GTCCGCGTTG TGGGCGCTCG CACCCGCCCC GGTGCAAGAG CAGCTGTACC TGGCCCACCG GGCCGCGCTC GCCGCCACCC TGGAGCTGAT CGAGGGCGAG GCGGTGTTCA CCCGCCTCGG CCACAACGGC GTCCGCCGGG TCCGCACCGC CGGCCTGGTC GCGGCCGCCT TCGACCACTG GGACTCCCGC AGGGGCGACC CGCAGCTGCA CACCCACGTC ACCGTCGCCA ACCGGGTCCA GGGCCCGGAC GGGCGGTGGC GCACCCTGGA CTCGGCCACC CTTCACCAGG CCGCCGTCGC CTACTCCGAG ACCTACGACC TGCTGCTGGC CGACGAGATC ACCCGCCGCA CCGGCCTGAC CTGGGACCGC CGGGAACGGC AGGCCGGCAG CAACCGCCGG ATCGGTCGGG AGCTGGCCCC GGTGCCGGAC GCATTGATCG CGGCCTTCTC GCAGCGGTCG GCGGACATCG AGGCCGCGGT CGACACCGCG ATCGCCCAGG CCGTGCTGCG CACCGGCCGC CGACCCGACG TCAACGCGAT CAACCGGATC CGGCAACACC TCACACTGGC CACCCGGGAC CGCAAACACG CCCCGAACCT GGCCGAGTCC GTGCAGCAAT GGCGGGCCAC CGCCGAGCAC GTGCTCGACC GAGACCCCAC CGACTGGGCC ACCACCGCCA CCACCACCGG ACAGGCGGGC CCGCTGCTCG GCCCGGCCGA CCTGGACGAC ATCGAGACCG AGGCGATCGC GCTGGGCGTC GTCGACGCCG TCGCCGCGGC CCGGCCGACG TGGACCCGGT GGAACCTGAC CGCGGAGACC ATGCGGCAAC TCGCCGCCCG CGGCCTGCAG TTCACCATCC CCGCCGACGC CGTGGCTGTC CGGGATCGGG TGGTGGCCGC CGCGCAGCGG CTGTCCGTCG CGCTGACCCC ACCCGAACTC GCCCCGATCC CGGACGCCCT GCGGGACGCG GACGGCGCCA GCCCATTCAC CCCGCCCGAG GTGTTCACCT CGACCGCGGT GCTCGCTGCC GAGGACCAGT TGCTGCGGCT CGGGCAGGAC CGGTCGGGGC CGGCCGTGGA CCCAGACCGG GCCCGGCGGG TCGCCGGACA GGACCTGCCC GGCCGCGACC ATGCGCTGGC CGCCGAGGAC CAGCGGCCGG CCGCCGTGCA GATCGTGACC TCCGGCCGGG TCGTCGACGT GCTGGTCGGG CCGGCCGGCA CCGGCAAGAC GACCACGATG GCCGGCGTCC GCGCCATCTG GGAAGCCGAG TACGGCCCCG GCACCGTCGT CGGCCTGGCC CCCTCCGCGA TGGCCGCCCA GGTCCTGGCC GCCGACGTCG GGATCGTCAC CGACAACACC GCCCAGTGGA TCGCCCAACA GGACCAGCAG ACCCGACGAG AACATCGGAT CCGGCTGCTC ACCGACGCGA TCACCACGCC CGAGAACCCG AACCGGATCC AGGGTCTGCG GGCTGCCCGC GGCAGGGTGC AGGGCGAGTA CGACCAGTGG CGGCTGCGGC CCGGGCAGTT GCTGATCGTC GACGAGGCCG GCATGTGCGG CACCTTCACC CTGGCCCGCC TCGCCGGGCA GGCCGCGAAG GCCGGCGCGA AGCTGCTGCT GGTCGGCGAC CCCTGCCAAC TGTCGCCGGT CGAGACCGGC GGCGCGTTCG GCCTGCTGTG CGCACGCCAC CCGGACCCGG CGACCCTGAC CCAGGTGCGC CGCTTCACCG ATCCCGACGG CACCCGCCGC GCCTGGGAGG AACAGGCCGC CGACCGGCTC CGGTCCGGCG ATTCGACCGC CCTGGCCGAG TATGACGCTC ACGGCCGGGT CCGGTCCGGC GACCAGGATC AGATGGCCGA CAACGCCTAC ACCGCCTGGC TGTCCGACAC CCACGACGGC CTGACCAGCG TCCTGATCGC CGCCGACAAC GACACCGTCG TGGAACTGAA CCAACGCGCC CGCACCGACC TGATCAGCAC AGGGCAGGTC GACAACACAG CGACCGCCCC GGTCCGCAAC GGCCTATCCG TCGGCCGCGG CGACGTCATC GTCACCCGCC GCATCGACCG CACCCAACCC GACGGCACCC CACGAACAGC CGACAGTGGC GACGGGTTCG TCCGAAACGG GCAACGCTGG CGGGTCGAAC GTGCCCACCG CGACGGCTCC CTCACCGTCC GCCTCCACAC CAGCGACGAC ACCGGCACGA CGCCGATCAG GCTCTCCGCC ACCTACGTCC ACGACCATGT CGACCTCGGG TACGCGACCA CCGCGCACCG CGCCCAGGGC CTGACCGTGG ACACCAGCCA CGTCCTCGCC GACGCCCTGA CCCAACGCGA AGCGTTCTAC GTCGCCATGA CCCGAGGCCG CTACCGCAAC ACCGCCTACC TCGTCCTCGA TCCGGCCGCC ACGGTCCGCG GAATCGTCGA CCACCCCATC GGCGGGTCGG CCGACCAGGA TTCCTGGACC ACCCAGCAGG TCGCCGAATC CATCAGCGAC CATTCATCGG CCGATACCTC GGCGCACGAA ACCATCCGGA CCGAGCAGGA CCGGCATGCC TCGATCCGAA CATTGGCCGA CGAAGCCGAC GCGATCGCCG CCTATGCCCA CGAGATCGCC GCCGCCGAAC TTCTGCTCAC CGTTTTCGGG GACCGGCCGG CCATCAGGCG GCTCCTGGAC GACGAGCATT TCCCCGAACT CGTCCTGGCC ATCCGGCAGG CTTATCACAC CGGAATGAAC ATCGCCGGCG AATTACCTCG GATCGTTCCT GCCTATTCGA TCGAGTCGAT GACCGCGCAA CAGCTGACAA CGGCGATTCG CGTCCACCTC CGGACCCGCC CACGAAATGG TGGCGCCGAA TTGGTGGCCG GGATCATCGT CGATGCCACG GTCGGATTGT CCGACCTGCA GATGCTCGAC GCATTGCAGA AGCGATATGA CCTCATCGAA CAACGGGCCG ATTCGCTCGC CGACGCGGCA ATCGAAACCA GCCAAAGCTG GGCAACCGCG CTCCGGCGGG CGCAACACCC AGACCAATCG GGACCGCTCC TGCGAATCGT CGCGGCCTAC CGGGAGCGTT GGGACATTAC CGGCGACGCG CCGTTGGGTC CGCGACCCGA TCAGTCCGCC GACCGCGCTC ACCACGGCGA CTACCAGCGG CTCATAGCAA TGCTGACCCC AACGACCACG AGGCCAATGA CCGCCACCGT CCCGGAATAC GGGCTTAACC GGACCATGCG CGGTCGGGAC CTGTAA
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Protein sequence | MSLSRMASVD YLIDHVAAGD GRAADPTASP LTRYYTAQGY PPGTWLGSGI AALGAGGMAG SEVTEAQLRE MFEGARNPFT GERLGRPPAK YPTRQERIDL RVGKLPDSLT AQSRAALVEK ITAEEKETKT RTAVAGFDLT FSVPKSVSAL WALAPAPVQE QLYLAHRAAL AATLELIEGE AVFTRLGHNG VRRVRTAGLV AAAFDHWDSR RGDPQLHTHV TVANRVQGPD GRWRTLDSAT LHQAAVAYSE TYDLLLADEI TRRTGLTWDR RERQAGSNRR IGRELAPVPD ALIAAFSQRS ADIEAAVDTA IAQAVLRTGR RPDVNAINRI RQHLTLATRD RKHAPNLAES VQQWRATAEH VLDRDPTDWA TTATTTGQAG PLLGPADLDD IETEAIALGV VDAVAAARPT WTRWNLTAET MRQLAARGLQ FTIPADAVAV RDRVVAAAQR LSVALTPPEL APIPDALRDA DGASPFTPPE VFTSTAVLAA EDQLLRLGQD RSGPAVDPDR ARRVAGQDLP GRDHALAAED QRPAAVQIVT SGRVVDVLVG PAGTGKTTTM AGVRAIWEAE YGPGTVVGLA PSAMAAQVLA ADVGIVTDNT AQWIAQQDQQ TRREHRIRLL TDAITTPENP NRIQGLRAAR GRVQGEYDQW RLRPGQLLIV DEAGMCGTFT LARLAGQAAK AGAKLLLVGD PCQLSPVETG GAFGLLCARH PDPATLTQVR RFTDPDGTRR AWEEQAADRL RSGDSTALAE YDAHGRVRSG DQDQMADNAY TAWLSDTHDG LTSVLIAADN DTVVELNQRA RTDLISTGQV DNTATAPVRN GLSVGRGDVI VTRRIDRTQP DGTPRTADSG DGFVRNGQRW RVERAHRDGS LTVRLHTSDD TGTTPIRLSA TYVHDHVDLG YATTAHRAQG LTVDTSHVLA DALTQREAFY VAMTRGRYRN TAYLVLDPAA TVRGIVDHPI GGSADQDSWT TQQVAESISD HSSADTSAHE TIRTEQDRHA SIRTLADEAD AIAAYAHEIA AAELLLTVFG DRPAIRRLLD DEHFPELVLA IRQAYHTGMN IAGELPRIVP AYSIESMTAQ QLTTAIRVHL RTRPRNGGAE LVAGIIVDAT VGLSDLQMLD ALQKRYDLIE QRADSLADAA IETSQSWATA LRRAQHPDQS GPLLRIVAAY RERWDITGDA PLGPRPDQSA DRAHHGDYQR LIAMLTPTTT RPMTATVPEY GLNRTMRGRD L
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