Gene Namu_1959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_1959 
Symbol 
ID8447568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp2155767 
End bp2159462 
Gene Length3696 bp 
Protein Length1231 aa 
Translation table11 
GC content71% 
IMG OID645041091 
ProductTrwC relaxase 
Protein accessionYP_003201337 
Protein GI258652181 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR02686] conjugative relaxase domain, TrwC/TraI family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00119811 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0194431 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTGT CGCGGATGGC GTCGGTCGAT TACTTGATCG ATCACGTCGC CGCCGGCGAC 
GGCCGCGCCG CCGACCCCAC CGCGTCGCCG TTGACGCGGT ACTACACGGC CCAGGGCTAC
CCACCGGGCA CCTGGCTGGG CTCCGGAATC GCGGCGCTCG GGGCGGGCGG GATGGCCGGT
TCCGAGGTGA CCGAGGCGCA ACTCCGCGAG ATGTTCGAGG GTGCCCGCAA CCCGTTCACC
GGCGAGCGGC TGGGCCGGCC CCCGGCCAAG TATCCGACCC GACAGGAGCG GATCGACCTG
CGCGTCGGCA AGCTCCCCGA CTCCCTCACC GCGCAGTCGC GGGCGGCACT GGTCGAGAAG
ATCACCGCGG AGGAGAAGGA GACCAAGACC CGGACCGCCG TCGCCGGGTT CGACCTGACG
TTCAGCGTGC CGAAGTCGGT GTCCGCGTTG TGGGCGCTCG CACCCGCCCC GGTGCAAGAG
CAGCTGTACC TGGCCCACCG GGCCGCGCTC GCCGCCACCC TGGAGCTGAT CGAGGGCGAG
GCGGTGTTCA CCCGCCTCGG CCACAACGGC GTCCGCCGGG TCCGCACCGC CGGCCTGGTC
GCGGCCGCCT TCGACCACTG GGACTCCCGC AGGGGCGACC CGCAGCTGCA CACCCACGTC
ACCGTCGCCA ACCGGGTCCA GGGCCCGGAC GGGCGGTGGC GCACCCTGGA CTCGGCCACC
CTTCACCAGG CCGCCGTCGC CTACTCCGAG ACCTACGACC TGCTGCTGGC CGACGAGATC
ACCCGCCGCA CCGGCCTGAC CTGGGACCGC CGGGAACGGC AGGCCGGCAG CAACCGCCGG
ATCGGTCGGG AGCTGGCCCC GGTGCCGGAC GCATTGATCG CGGCCTTCTC GCAGCGGTCG
GCGGACATCG AGGCCGCGGT CGACACCGCG ATCGCCCAGG CCGTGCTGCG CACCGGCCGC
CGACCCGACG TCAACGCGAT CAACCGGATC CGGCAACACC TCACACTGGC CACCCGGGAC
CGCAAACACG CCCCGAACCT GGCCGAGTCC GTGCAGCAAT GGCGGGCCAC CGCCGAGCAC
GTGCTCGACC GAGACCCCAC CGACTGGGCC ACCACCGCCA CCACCACCGG ACAGGCGGGC
CCGCTGCTCG GCCCGGCCGA CCTGGACGAC ATCGAGACCG AGGCGATCGC GCTGGGCGTC
GTCGACGCCG TCGCCGCGGC CCGGCCGACG TGGACCCGGT GGAACCTGAC CGCGGAGACC
ATGCGGCAAC TCGCCGCCCG CGGCCTGCAG TTCACCATCC CCGCCGACGC CGTGGCTGTC
CGGGATCGGG TGGTGGCCGC CGCGCAGCGG CTGTCCGTCG CGCTGACCCC ACCCGAACTC
GCCCCGATCC CGGACGCCCT GCGGGACGCG GACGGCGCCA GCCCATTCAC CCCGCCCGAG
GTGTTCACCT CGACCGCGGT GCTCGCTGCC GAGGACCAGT TGCTGCGGCT CGGGCAGGAC
CGGTCGGGGC CGGCCGTGGA CCCAGACCGG GCCCGGCGGG TCGCCGGACA GGACCTGCCC
GGCCGCGACC ATGCGCTGGC CGCCGAGGAC CAGCGGCCGG CCGCCGTGCA GATCGTGACC
TCCGGCCGGG TCGTCGACGT GCTGGTCGGG CCGGCCGGCA CCGGCAAGAC GACCACGATG
GCCGGCGTCC GCGCCATCTG GGAAGCCGAG TACGGCCCCG GCACCGTCGT CGGCCTGGCC
CCCTCCGCGA TGGCCGCCCA GGTCCTGGCC GCCGACGTCG GGATCGTCAC CGACAACACC
GCCCAGTGGA TCGCCCAACA GGACCAGCAG ACCCGACGAG AACATCGGAT CCGGCTGCTC
ACCGACGCGA TCACCACGCC CGAGAACCCG AACCGGATCC AGGGTCTGCG GGCTGCCCGC
GGCAGGGTGC AGGGCGAGTA CGACCAGTGG CGGCTGCGGC CCGGGCAGTT GCTGATCGTC
GACGAGGCCG GCATGTGCGG CACCTTCACC CTGGCCCGCC TCGCCGGGCA GGCCGCGAAG
GCCGGCGCGA AGCTGCTGCT GGTCGGCGAC CCCTGCCAAC TGTCGCCGGT CGAGACCGGC
GGCGCGTTCG GCCTGCTGTG CGCACGCCAC CCGGACCCGG CGACCCTGAC CCAGGTGCGC
CGCTTCACCG ATCCCGACGG CACCCGCCGC GCCTGGGAGG AACAGGCCGC CGACCGGCTC
CGGTCCGGCG ATTCGACCGC CCTGGCCGAG TATGACGCTC ACGGCCGGGT CCGGTCCGGC
GACCAGGATC AGATGGCCGA CAACGCCTAC ACCGCCTGGC TGTCCGACAC CCACGACGGC
CTGACCAGCG TCCTGATCGC CGCCGACAAC GACACCGTCG TGGAACTGAA CCAACGCGCC
CGCACCGACC TGATCAGCAC AGGGCAGGTC GACAACACAG CGACCGCCCC GGTCCGCAAC
GGCCTATCCG TCGGCCGCGG CGACGTCATC GTCACCCGCC GCATCGACCG CACCCAACCC
GACGGCACCC CACGAACAGC CGACAGTGGC GACGGGTTCG TCCGAAACGG GCAACGCTGG
CGGGTCGAAC GTGCCCACCG CGACGGCTCC CTCACCGTCC GCCTCCACAC CAGCGACGAC
ACCGGCACGA CGCCGATCAG GCTCTCCGCC ACCTACGTCC ACGACCATGT CGACCTCGGG
TACGCGACCA CCGCGCACCG CGCCCAGGGC CTGACCGTGG ACACCAGCCA CGTCCTCGCC
GACGCCCTGA CCCAACGCGA AGCGTTCTAC GTCGCCATGA CCCGAGGCCG CTACCGCAAC
ACCGCCTACC TCGTCCTCGA TCCGGCCGCC ACGGTCCGCG GAATCGTCGA CCACCCCATC
GGCGGGTCGG CCGACCAGGA TTCCTGGACC ACCCAGCAGG TCGCCGAATC CATCAGCGAC
CATTCATCGG CCGATACCTC GGCGCACGAA ACCATCCGGA CCGAGCAGGA CCGGCATGCC
TCGATCCGAA CATTGGCCGA CGAAGCCGAC GCGATCGCCG CCTATGCCCA CGAGATCGCC
GCCGCCGAAC TTCTGCTCAC CGTTTTCGGG GACCGGCCGG CCATCAGGCG GCTCCTGGAC
GACGAGCATT TCCCCGAACT CGTCCTGGCC ATCCGGCAGG CTTATCACAC CGGAATGAAC
ATCGCCGGCG AATTACCTCG GATCGTTCCT GCCTATTCGA TCGAGTCGAT GACCGCGCAA
CAGCTGACAA CGGCGATTCG CGTCCACCTC CGGACCCGCC CACGAAATGG TGGCGCCGAA
TTGGTGGCCG GGATCATCGT CGATGCCACG GTCGGATTGT CCGACCTGCA GATGCTCGAC
GCATTGCAGA AGCGATATGA CCTCATCGAA CAACGGGCCG ATTCGCTCGC CGACGCGGCA
ATCGAAACCA GCCAAAGCTG GGCAACCGCG CTCCGGCGGG CGCAACACCC AGACCAATCG
GGACCGCTCC TGCGAATCGT CGCGGCCTAC CGGGAGCGTT GGGACATTAC CGGCGACGCG
CCGTTGGGTC CGCGACCCGA TCAGTCCGCC GACCGCGCTC ACCACGGCGA CTACCAGCGG
CTCATAGCAA TGCTGACCCC AACGACCACG AGGCCAATGA CCGCCACCGT CCCGGAATAC
GGGCTTAACC GGACCATGCG CGGTCGGGAC CTGTAA
 
Protein sequence
MSLSRMASVD YLIDHVAAGD GRAADPTASP LTRYYTAQGY PPGTWLGSGI AALGAGGMAG 
SEVTEAQLRE MFEGARNPFT GERLGRPPAK YPTRQERIDL RVGKLPDSLT AQSRAALVEK
ITAEEKETKT RTAVAGFDLT FSVPKSVSAL WALAPAPVQE QLYLAHRAAL AATLELIEGE
AVFTRLGHNG VRRVRTAGLV AAAFDHWDSR RGDPQLHTHV TVANRVQGPD GRWRTLDSAT
LHQAAVAYSE TYDLLLADEI TRRTGLTWDR RERQAGSNRR IGRELAPVPD ALIAAFSQRS
ADIEAAVDTA IAQAVLRTGR RPDVNAINRI RQHLTLATRD RKHAPNLAES VQQWRATAEH
VLDRDPTDWA TTATTTGQAG PLLGPADLDD IETEAIALGV VDAVAAARPT WTRWNLTAET
MRQLAARGLQ FTIPADAVAV RDRVVAAAQR LSVALTPPEL APIPDALRDA DGASPFTPPE
VFTSTAVLAA EDQLLRLGQD RSGPAVDPDR ARRVAGQDLP GRDHALAAED QRPAAVQIVT
SGRVVDVLVG PAGTGKTTTM AGVRAIWEAE YGPGTVVGLA PSAMAAQVLA ADVGIVTDNT
AQWIAQQDQQ TRREHRIRLL TDAITTPENP NRIQGLRAAR GRVQGEYDQW RLRPGQLLIV
DEAGMCGTFT LARLAGQAAK AGAKLLLVGD PCQLSPVETG GAFGLLCARH PDPATLTQVR
RFTDPDGTRR AWEEQAADRL RSGDSTALAE YDAHGRVRSG DQDQMADNAY TAWLSDTHDG
LTSVLIAADN DTVVELNQRA RTDLISTGQV DNTATAPVRN GLSVGRGDVI VTRRIDRTQP
DGTPRTADSG DGFVRNGQRW RVERAHRDGS LTVRLHTSDD TGTTPIRLSA TYVHDHVDLG
YATTAHRAQG LTVDTSHVLA DALTQREAFY VAMTRGRYRN TAYLVLDPAA TVRGIVDHPI
GGSADQDSWT TQQVAESISD HSSADTSAHE TIRTEQDRHA SIRTLADEAD AIAAYAHEIA
AAELLLTVFG DRPAIRRLLD DEHFPELVLA IRQAYHTGMN IAGELPRIVP AYSIESMTAQ
QLTTAIRVHL RTRPRNGGAE LVAGIIVDAT VGLSDLQMLD ALQKRYDLIE QRADSLADAA
IETSQSWATA LRRAQHPDQS GPLLRIVAAY RERWDITGDA PLGPRPDQSA DRAHHGDYQR
LIAMLTPTTT RPMTATVPEY GLNRTMRGRD L