| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_1105 |
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| Symbol | |
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| ID | 8446701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nakamurella multipartita DSM 44233 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013235 |
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| Strand | + |
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| Start bp | 1227836 |
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| End bp | 1231036 |
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| Gene Length | 3201 bp |
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| Protein Length | 1066 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 645040242 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003200501 |
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| Protein GI | 258651345 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.147445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTAC ACGGGGGAAT GAGCGAGAGC GAATGGGAAC AGCTCGCTCT GGACACCTTG
GGCGAACTCG GCTGGCAACC AGTGCACGGC AAGGACGTCG CACCGGGCAG TGGAGAGCGG
GAGAAGTGGG AGGACCTGCA CATCCCGTCC CGCATGCTGG CCGCGATGCG AAGGCTGAAC
CCGGAGGTGC CCGAGCAGTA TCTGCAGCAG GCGCTTGCCG AGATCGTCAC GCCGACGTCA
AATGACGCGA TCACCGAGAA CTACCGGCTG CACATGGCGG TCGCCGAGGG ATACCGGGGG
ATCACCTACA TCGATCACGA TGGCGCCGAA CAGAATCCGA CGATCCGCCT GGTCAGTCAG
GACCCCGAGG CCAACGACTG GCTCGCCGTC GGCCAGGTCA CCATTTTCCA GGGGGAGTTC
GAGCGTCGCT TCGACATCGT GCTGTACTGC AACGGAATGC CGGTGTCCAT CGTCGAACTC
AAACGGGCCG GCAGCAAGTA CGCCGATCTG GCGTCCGCTC ACACGCAATT GCAGAACTAT
CTCGGGCTGT TCCCGATGGC CTTCCGTTTC TGCGTCTTCA CCATCGTCTC CGACGGCATC
ACCGCGAAGT ACGGCACCCC CTTCACCCCG CTGCACCACT TCTCGCCGTG GAACGTCGAC
GAGCACGGCG CCGTCGTCAA TCCTGGCGAC CGCGACGCGC AGGGCAACGC CGACACCGCC
ATCGAGGTCG CCCTGCACGG CCTCTACACC CACGACCGCT TCCTTGACCT GCAACGCAGT
TACACCGCGT TCGACGAGGG CGCCGAAGGC TTGAGCAAGC GCATCGCCAA GCCGCATCAG
TACGTCGCGG TCAGCAAGGC GCTCGCCAAG ACAATCGACG CGGTCGAGAG CGACGGGAAA
GCAGGCGTCG TCTGGCACAC CCAGGGCTCC GGAAAGTCCA TGGAGATGGA GCTTTACACC
AACCTGGTCA TCACCGCGCC GAAGCTGCTC AATCCCACCG TCATCGTCAT CACCGATCGC
ACCGAACTGG ACGGCCAGCT GTTTCAGAGC TTCCGGGTCA GCCGCCTGCT GCCCGAAGAA
CCCCAGCAGA TCCGTCGGCG ATTGGAACTC CGCGACGAAC TGTCCAACCG GATCAGCGGC
GGCATCTACT TCACCACCCT GCAGAAATTC AGCAAGACCG GCGACGAGAA GCTGTCCGGT
TCGGATCACC CCCTGCTGTC CAATCGCCGC AACATCATTG TGATGGTCGA CGAGGCGCAC
CGCAGCCACT ACGACGACCT TGACGGCTAC GCCCGGCACC TGCGCGACGC GCTGCCGCAC
GCCACCCTGA TCGCGTTCAC CGGCACCCCC ATCTCCTTCG ACGACCGCAA CACCCGCGAC
GTGTTCGGCG ACTACGTCGA CATCTACGAC CTGAGCCGAG CGGTCCAGGA CGGCGCCACC
GTGCCGGTGT ACTTCGAACC TCGGCTGATC AAGGTCGGCC TGGCCGAGGG CGTCACCCAG
GAGCAGCTCA ACGAAGCCGC CGACCAGGCC ACCGAAGGCC TGGACGACGT CGAGCGGACC
AAGATCGAAC AAGGCGTGGC GGTGATCAAC GCGGTCTACG GCGCGCCGGC CCGGCTGCGT
GCGCTCGCCG GCGACCTGGT CGACCACTGG GAGCAACGGC GCACCGCGAT GCGACCGTTG
ATCGGCGCGC ACGGCAAGGC GATGATCGTC GGCGGCACCC GGGAGATCTG CGCCCGGCTG
TACGAGGAGA TCATCGCGCT GCGCCCGAAC TGGCACTCGC CCGACCTGCA CCAGGGCGTC
ATCAAGGTCG TCTACTCGTC GGACTCGTCC GACACGGGAC TGATCGCGAA GCACCGACGG
CGCGCGAGTG ACAACGCGAC GATCAAGCAG CGGCTCCGCG AGGTCGACGA TGAGCTCGAA
TTGGTCATCG TCAAGGACAT GATGCTGACC GGTTACGACT CGCCGCCCCT GCACACCCTG
TACCTGGACC GCCCGCTCAA GGGAGCGCTG CTCATGCAGA CCCTGGCCCG GGTCAACCGC
ACATTCAAGG AGAAGGACGC TGGGCTCCTG GTCGGTTATG CGCCGCTGGC CGACAATCTG
CAGCAAGCTC TGTCCGAATA CACCCAGCAG GATCAGCAGA ACAAACCGCT CGGCCGGGAC
ACCGGAGAAG CCGTTGTGCT GGTCAAGGAA CTGCTGCAGG GCATCGAGAC GATGCTGGCC
GGCTTCGACT GGCGCAGACT CATCGTTCCT CGCCAGCCCA AGTCCTACGC CATCGCGGCG
ACCGCCACGG CGAACTACCT GCGGAGTCCC GAGACCCCAG GCAATCAGGT CGCCGAGGGT
GAAGAACCAC TGCGGTCGCA GTTCCGGCAA ACGGCCGGGC GGCTGACCCG GGCTTGGGCC
TTGGCGGCCG GCGACCCCGG ACTGGCGGAC CAGAAGTGGG ACGTGCAGTT CTACGAAGAG
GTTCGCATCT ACATGGGCAA GTTCGACGCC GACGAACGCC AGGCCAACGG CGAGCCGGTC
CCCGAGGAGA TCGAGCTGCT GCTCTCGTCG CTGATCGCCG AGTCGACCGC ATCGGGCGAA
ATCATGGACA TTTACCAGGC GGCCGGGATT CCGAAGCCGT CGCTGTCCGA CCTGACCCCG
GATTTCGCCC GAAAGGCGCA GCAGGCCCGC AACCCGCACC TGGCCATCGA GGCGCTGCGT
AAGCTGGTCG CCGAGGAATC GGGCAAGGTG TCCCGGCATA ACCTGGTGCG CCAGCGGGCG
TTCGGCGAAC GAATCGCCGA GCTGATGATC CGGTATGCCA ACCAGCAGCT GACCTCGGCC
GAGGTGATCG CCGAACTGGT CGCCATGGCT CAGGAGATCA AGGCCGAAGC GGGGCGCGGG
CAGCACTTCT CGCCCCCGCT GGACGAGGAT CAACTCGCGT TCTATGACGC GGTCGCGCAG
AACCCCTCCG CGATCGACGT GCTCGGCGAG GGCAAGCTGG CCGACATCGC CCGGGACTTG
GTCACGGTCA TGCAACGCGA CATCCGCACC GACTGGACCG TTCGCGAGGA CGTTCGGTCC
CGCCTGCGGT CTTCGATCCG CCGGCTGTTG GCGATTCACA AGTACCCCCC GGATAAGGCC
CAGGGGGCCA TCGAGTTGGT CATGGAGCAG ATGGAGTCGA TGGCTCCGAG GTACTCGGAG
CAGCGTCGGG CCGGCTCGTA G
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| Protein sequence | MGLHGGMSES EWEQLALDTL GELGWQPVHG KDVAPGSGER EKWEDLHIPS RMLAAMRRLN
PEVPEQYLQQ ALAEIVTPTS NDAITENYRL HMAVAEGYRG ITYIDHDGAE QNPTIRLVSQ
DPEANDWLAV GQVTIFQGEF ERRFDIVLYC NGMPVSIVEL KRAGSKYADL ASAHTQLQNY
LGLFPMAFRF CVFTIVSDGI TAKYGTPFTP LHHFSPWNVD EHGAVVNPGD RDAQGNADTA
IEVALHGLYT HDRFLDLQRS YTAFDEGAEG LSKRIAKPHQ YVAVSKALAK TIDAVESDGK
AGVVWHTQGS GKSMEMELYT NLVITAPKLL NPTVIVITDR TELDGQLFQS FRVSRLLPEE
PQQIRRRLEL RDELSNRISG GIYFTTLQKF SKTGDEKLSG SDHPLLSNRR NIIVMVDEAH
RSHYDDLDGY ARHLRDALPH ATLIAFTGTP ISFDDRNTRD VFGDYVDIYD LSRAVQDGAT
VPVYFEPRLI KVGLAEGVTQ EQLNEAADQA TEGLDDVERT KIEQGVAVIN AVYGAPARLR
ALAGDLVDHW EQRRTAMRPL IGAHGKAMIV GGTREICARL YEEIIALRPN WHSPDLHQGV
IKVVYSSDSS DTGLIAKHRR RASDNATIKQ RLREVDDELE LVIVKDMMLT GYDSPPLHTL
YLDRPLKGAL LMQTLARVNR TFKEKDAGLL VGYAPLADNL QQALSEYTQQ DQQNKPLGRD
TGEAVVLVKE LLQGIETMLA GFDWRRLIVP RQPKSYAIAA TATANYLRSP ETPGNQVAEG
EEPLRSQFRQ TAGRLTRAWA LAAGDPGLAD QKWDVQFYEE VRIYMGKFDA DERQANGEPV
PEEIELLLSS LIAESTASGE IMDIYQAAGI PKPSLSDLTP DFARKAQQAR NPHLAIEALR
KLVAEESGKV SRHNLVRQRA FGERIAELMI RYANQQLTSA EVIAELVAMA QEIKAEAGRG
QHFSPPLDED QLAFYDAVAQ NPSAIDVLGE GKLADIARDL VTVMQRDIRT DWTVREDVRS
RLRSSIRRLL AIHKYPPDKA QGAIELVMEQ MESMAPRYSE QRRAGS
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