Gene Namu_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_1007 
Symbol 
ID8446600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp1104820 
End bp1107381 
Gene Length2562 bp 
Protein Length853 aa 
Translation table11 
GC content71% 
IMG OID645040143 
Productdiguanylate cyclase/phosphodiesterase with GAF sensor 
Protein accessionYP_003200405 
Protein GI258651249 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAG CCCTTCACCC GACCGCCCGG TCCCGGCGGA CGTTCTCGGC CCGCCAGGTG 
TTCCCGGTGG TCGCCACGGT GATGTTCCTG CTGGCCGGAG CCCTCTGGGT GCCGGTCCTG
CGGCTGTCGG CCAACCTGGT CGATCCCGAG TACCTGCTGC TGGGCATGCT GGTCCTGCTG
GTGGCGTTCC TGGCCGGCGA ACTGTTCCCC CTGCACATCG AGGTCCGCCG GGAAACGTTG
CTGGTCAGCG GATCCGAACT GCCGATGGTC TTGGGGCTGT TGCTGTTGCC GGCCTGGACG
GTCGGGCTGA CCCACCTGGT GGCCAGCGGA CTGGTCTTTT TGTTCCGGCG GGACAGCTCC
CGCAACATCG CGGTCAACCT GTCGTTCATC GCCGCCGAGA CCGGCGCCGC GGCCCTGATC
ATGTTGCTGA TCACCCGAGC CGCCCCGGCC CCGCCGGTCG GCGTGCAGTA CCTGGCGGTC
TCGGTCGGCG TGCTGACCGG GGCACTGCTG TCGGCGATCG CCGTCGGGCT GACCTACCGG
CTGCTCGGTC CGGCCGAACC GCTGGGCCGG ATCATCGTCC GGTCGATGAT CTCGGCATTG
GCCATCGTGA CGTTCGCGCT GGTCGGCTAC ACCGTGTGGA TGGCCGGTCC GTTCGGGCCG
TGGCTGTGCG TGGCCCTGGC CGGGGTCCTG GCCGTGCTCT ACCGGACCTA CTTCGTCTTC
CTGCGCCAGC ACGCCGACCT GACCCGGATG TACAGCTTCG TCCGCGAGGT CGGTGCGGTG
GGCGCCGCGG CCGACGGGTG GCGGGGCGTG CTCGAGCAGG TGCGCGATCA GTTCAACGCC
GAGGTGGCGG TGCTGCGCCT GGACGAGGGT GACGGCTCTC TGGCCGGTAT CGCCGTCGGC
CCCGACGGGC CGCGCCCGGA GCGGACGCTG CCGGACACCG ACCCGCTGCT GGTGCAGGCC
CGGTCCGAGG GTCGGGTCCG GGTCTCGACC GATCGGACCA TGGACACCCC GGTGCTCGCG
GCCCTGGCCG AACGGCAGGC GTGGGACGTG CTCGTGGTGC CGCTGCGCTC GGGCGACCGG
GACCGCGGTT ACCTGGAACT GCACGACCGG CTCAGCCGCT GGGACCGCTT CCGGGACGAG
GACCTCCGGG TCCTGGAGAC GCTGGGCGGC CACGTCGCCA CCGCCCTGGA CAATCTGCGG
CTGATGGATT CGTTGCGGCA CGAGGCCTAC CACGACGCCA TCACCGGCCT GCGCAACCGG
GTCGGTCTCA CCGTCGCCGG CCAGGAGGCG ATGTCCGGCG GGGGCGGGGG CGCCATCCTG
CTGGTCGAGC TCAATGTCCT GTCCCAGGTC AACAACGCCC TCGGGCACGA CCGCGGGGAG
CTGCTGCTGC GGATGGCCGG CGAGCGGCTG GTCGCGCTGG TCGGACCGAC CCGCCCGGTC
GCCCGGATCG AGGCCGATCG GTTCGCCGTG CTCTGCGAGC CGCTGCCCGA GACCGAGCTG
ACCGCGCTGG GCGGGCAGAT GCTCTCCGCC GTCGGCGGCG GGTACTCGAT CGACGGCATC
GAGATCGATC CCCAGGGGGC GGTCGGCATC GCCGTCGTCC CGGCCGGCGC GGCCGGTCAT
GGCTCCGACA GCGGCCTGGA ACCCAGCGTG CTGCTGCAGC GGGCCGAGAT GGCCATGCTG
GCGGCCAAGG TCCGGCAGGA GTCGGTGCAG ATCTACCGGC CCAGCATGGG GGAGGTCTAC
CGGCGCCGGT TCCAGCTGGT CACCCAGTTC CGGCAAGCGG TCGAGCAGGG CCGGATCATC
GTGCACTACC AGCCCAAGGT CGACCTGGCC CACCGGGAGC TGGTCGGCGT CGAGGCGTTG
GTGCGCTGGA TGCATCCGGA ATTCGGGCTC GTCTCGCCGG CCGAGTTCGT CGAGGCGATC
GAGGCCACCG GTTCGATCGA CATCCTGCTC GAGCACGTGC TGGACAGCGT GCTGGCCCAG
CTGTGGCAGT GGCGCAGCGC TGGGCTGCAT ATCACCGCGT CGGTCAACCT GTCGGTGCAC
AACCTGCTGG CCGAGAACTT CCCGGCCACC GTGGCCGCGG CCCTGCGCCG GCACCAGGTG
CCGGCCCAGC TGCTCACCTT CGAGATCACC GAGTCGAACG TGATGACCGA CCCGGAACAC
TCGCTGCCGG TCCTGCGCGA GCTGCACGCC ATGGGCATCC AGCTGTCGGT CGACGACTTC
GGGACCGGCT ACTCCTCCCT GGCCTACCTG CGGCGACTGC CGATCGACGA GATCAAGATC
GACCGCTCGT TCGTGCAGGG GATGGGCACC GACCTGTCGG ACCTGGCCAT CGTCCGGGCC
ATCGTCGACC TGGGCCACTC GCTGGGCCTG CGGGTGGTCG CCGAGGGCGT GGAAGAGGAG
GCGGCCCGGG ACGCGCTGCG CGAGATGGCC TGCGACGAGG CTCAGGGCTT CCTGATCTCC
CGTCCGGTGC CGCTGGATCG GTTCGAGGCC TGGCTGGCCT CGCGCACGGT CAGCATCTAC
GACCCGGCCT CGACCACCCA CGTGCTGCGG ATGATGAGTT GA
 
Protein sequence
MTKALHPTAR SRRTFSARQV FPVVATVMFL LAGALWVPVL RLSANLVDPE YLLLGMLVLL 
VAFLAGELFP LHIEVRRETL LVSGSELPMV LGLLLLPAWT VGLTHLVASG LVFLFRRDSS
RNIAVNLSFI AAETGAAALI MLLITRAAPA PPVGVQYLAV SVGVLTGALL SAIAVGLTYR
LLGPAEPLGR IIVRSMISAL AIVTFALVGY TVWMAGPFGP WLCVALAGVL AVLYRTYFVF
LRQHADLTRM YSFVREVGAV GAAADGWRGV LEQVRDQFNA EVAVLRLDEG DGSLAGIAVG
PDGPRPERTL PDTDPLLVQA RSEGRVRVST DRTMDTPVLA ALAERQAWDV LVVPLRSGDR
DRGYLELHDR LSRWDRFRDE DLRVLETLGG HVATALDNLR LMDSLRHEAY HDAITGLRNR
VGLTVAGQEA MSGGGGGAIL LVELNVLSQV NNALGHDRGE LLLRMAGERL VALVGPTRPV
ARIEADRFAV LCEPLPETEL TALGGQMLSA VGGGYSIDGI EIDPQGAVGI AVVPAGAAGH
GSDSGLEPSV LLQRAEMAML AAKVRQESVQ IYRPSMGEVY RRRFQLVTQF RQAVEQGRII
VHYQPKVDLA HRELVGVEAL VRWMHPEFGL VSPAEFVEAI EATGSIDILL EHVLDSVLAQ
LWQWRSAGLH ITASVNLSVH NLLAENFPAT VAAALRRHQV PAQLLTFEIT ESNVMTDPEH
SLPVLRELHA MGIQLSVDDF GTGYSSLAYL RRLPIDEIKI DRSFVQGMGT DLSDLAIVRA
IVDLGHSLGL RVVAEGVEEE AARDALREMA CDEAQGFLIS RPVPLDRFEA WLASRTVSIY
DPASTTHVLR MMS