| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_1000 |
|---|
| Symbol | |
|---|
| ID | 8446592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | + |
|---|
| Start bp | 1098798 |
|---|
| End bp | 1100312 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 645040135 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_003200398 |
|---|
| Protein GI | 258651242 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGACC GGCCGGCTGT CAAAAGTTCT GGTCCGCGAT CCGCGCAGGC TCGATCGGAG
CCGATCAGAA CCGAACAGAA CGCCGGCGCC CCCGACCCGT TGACCATCGG CCGCCGGCTG
CGGCACCTGC GCAAGGCCGC CGGCCTGACG CTGTCCGACG TCGCCGAGGC CGCCGGCATC
AGCCCGTCGG CGCTCTCGTT GTTCGAGAAC GGCAAGCGGG AGGCCAAGCT GTCGCTGCTG
ACCACCCTGG CCGGGGTGCT CGGCACCGAT CTGGGGGAAC TGCTGGCGGT GGCCCCGCCG
AGCCGGCGGG CGGCGCTGGA GATCGAGCTG GAACGGGCGC AACGCTCGTC CGGGTTCAAG
TCGCTGGAGA TCGCGGCGGT CAAGCCGGGC CCGCGGCTGC AGACCGAGGC GCTGGAGTCG
CTGGTCGGCC TGCACCGGGC GCTGGCCCGG ATCCAGGCCG AGCGGCAGGC CACCCCGGAA
CAGGCCCGCC GGGCCAACGC CGAGTTGCGC GCGGAGATGC GCCGGCGCGG CAACTACTTC
GGCGAGATCG AGAAGGTGGC CGCCGATCTG CTGACCGCCA CCGGGTACGA GGGCGGTCCG
ATCACCCGGT CCGTGGTCGA CCGGCTGGCC GCGCACCTGG GCTTCCGGCT GCGGCACTCG
GGGGATCTGC CCCAGTCCAC CCGCACGGTG ACCGACCTGG CCCACCGCAT CATCTACCTG
CCCCAGCCCG ACGCCGGCCA GCACGACTCG CGCTCCCTGG CCCTCAACGC GCTCGGCCAT
GTGGTGCTGG GACACGAAGT GCCGCAGGAC TATTCGGAGT TCCTGCGGCA GCGGGTGGAG
ATCAACTACT TCGCCGCCTC GCTGCTGATC CCCGAGCGCG GCGCGCTGAC CCTGCTCCGG
CGGGCCAAGG CGGCCAAGGA CATCGCGATC GAGGACCTGC GCGATGCCTA CGCGGTCTCC
TACGAGACCG CCGCGCACCG CTTCACCAAC CTGGCCACCC GGCACCTGGA CCTGCCCGTG
CACTTCATGC GGATCAGCAA GGCCGGGGTG ATCTACAAGG CCTACGAGAA CGATGGCGTG
CAGTTCCCGA TGGACGCGTC CGGGGCGATC GAGGGCCAGC GGGTCTGCCG GTACTGGACC
GCCCGGGTCG TCTTCGACCG GCCCGACCTG TCCTCGGCCT ACCAGCAATA CACCGACACC
AAGTCCGGAA CCTATTGGTG TACGGCCATT GTCGACCGCA CGGCGCAGGG CTTGTTCTCG
GTCAACGTGG GTGTGCCCTA CGCCGACGTC AAGTGGATGC GCGGTCGGGA GACCACCGAA
CGCTCCCGCT CCCGCTGCCC GGACCCGACC TGCTGCGCCC TGCCGCCGTC CGAGCTGGCC
GACCGCTGGG AGGGCATGGC CTGGCCCAGC GCCCGGGTGC ACTCGCACCT GCTGGCCGCC
ATGCCGCCCG GGGTCTTCCC GGGGGTGGAC CAGGTCGAGG TGCTCGGCTT CCTGGAGCGG
CACTCCGCCG ACTGA
|
|---|
| Protein sequence | MADRPAVKSS GPRSAQARSE PIRTEQNAGA PDPLTIGRRL RHLRKAAGLT LSDVAEAAGI
SPSALSLFEN GKREAKLSLL TTLAGVLGTD LGELLAVAPP SRRAALEIEL ERAQRSSGFK
SLEIAAVKPG PRLQTEALES LVGLHRALAR IQAERQATPE QARRANAELR AEMRRRGNYF
GEIEKVAADL LTATGYEGGP ITRSVVDRLA AHLGFRLRHS GDLPQSTRTV TDLAHRIIYL
PQPDAGQHDS RSLALNALGH VVLGHEVPQD YSEFLRQRVE INYFAASLLI PERGALTLLR
RAKAAKDIAI EDLRDAYAVS YETAAHRFTN LATRHLDLPV HFMRISKAGV IYKAYENDGV
QFPMDASGAI EGQRVCRYWT ARVVFDRPDL SSAYQQYTDT KSGTYWCTAI VDRTAQGLFS
VNVGVPYADV KWMRGRETTE RSRSRCPDPT CCALPPSELA DRWEGMAWPS ARVHSHLLAA
MPPGVFPGVD QVEVLGFLER HSAD
|
|---|
| |