| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Namu_0203 |
|---|
| Symbol | |
|---|
| ID | 8445783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nakamurella multipartita DSM 44233 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013235 |
|---|
| Strand | - |
|---|
| Start bp | 228484 |
|---|
| End bp | 230463 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645039350 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
|---|
| Protein accession | YP_003199625 |
|---|
| Protein GI | 258650469 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCA AGCAGAGCCT CGAGGAATTG GTCACGCAGG CGGCCACCGA CCTCATGGGT
GTCACTGCGG TGTCCTTGCG CGGCGCGACC CAGAATCTGC TGCGGGAACT GGTCGACTAC
TTCGGCGTCG ACACCAGCTT CCTGCGTCGC AACGACCACC AGATCCACGC CAGCCTGCTG
GTCGCCGAGT GGCCGCCCCG CATCGACGTC CCCGACCCCG ATCCGCTCGC CCTGGTCTAC
TTCGAGGGGG CCGATCCCAC GTTCGCGGCC TCGGAAACCC TCTCGCACGT GACGATCACC
CGACCCGGCG AACTGTTCGG CGCCGAGGTC GACGATTCCG ACTACCAGGA GCTGGTCCGC
CGCGCGTCCG GCGTGCAGAT CGGCGTCTCC CTGGCCGTCG TGCCCATGCT GGGCACTCAC
GACACCATGG GCGTCCTGGG CTTCGTCAAG TACGGCGACC GGGAATGGAC CGACGCCGAG
ATCAATGCGC TGCGGGCCGT CGCCGGACTG CTGGCCCAGC TGCAGGCCCG GGTGGACGCC
GAGGAACGCC TGCGTCACCA GGCCTTCCAC GACGAGCTGA CCGACCTGGC CAACCGCCGG
TTCCTGGTCG AGGAGATCAC CCAGCGGCTA GAGCCCGGCA CCGGCGATCC GGTCGGGCTG
ATCTTCATGG ATGTCGATCG GCTCAAGGCG CTGAACAGCT TCTTCGGACA CGCGGCCGGC
GATCAATACC TGCAGATCCT GGCCGGCCGG CTGCGCGAGC GGATCAGCGC CCGGCACATG
GTGGCGCGGC TCGGCGGCGA CGAGTTCGTG GTGATCATGG GCGGGCCCAC CGACGAGGCG
ACCGCCCGGG CCCTGGCCGA GAAGCTGCGT CAGGTGGCCA ACCAGCCCAT CCTGGTCGGC
GGCGAGGAGG TCAGCCGGGC CGTGAGCATC GGCGTCGCCC TCGGCCAGCC TGGCCAGACG
TCGGCCTCCG AGCTGATGAA CCAGGCCGAC CAGGCGATGC TGGAGGCCAA GAGCCGCGGC
GGCAACGAGA TCGGCGTCTT CTCGGCCCAG ATGCGCCGGG CCAACGAGAT CCGCACCGAC
ATCGAGCTGC ACATCGGCAC CGCGATCCGG CACGGCGCGC TGGTCCTGCA CTACCAGCCC
GAGGTCGACC TGCGGGACGG CCGGATCCTG GGCGTGGAGG CGTTGGTCCG CTGGCCCAAC
CCCACGCTGG GACTGCTGCA GCCGGGCGCG TTCATCGACG TCGTGGAGGC CACCAACCTG
GCCGGTGAGC TGGGCCGGTG GGTGCTCGGG CAGGCCTGCC GGCAGCTGCG CGAGTGGCAG
TTGCACTATC CCGAGCGGCG GCTGGGCATG AGCGTGAACG TCTCGCCCGC TCAGCTGATC
ACCTTGGATT TCGTCGCCAC GGTCGCCAAG ACCCTGGCCG ACCACGAACT CGACGGTCAG
TGGCTGACCC TGGAGATCAC CGAGCAGGCG CTGGTCCGGG ACACCGACCA GGCGCTGGCC
ACCCTGCGCG GCCTGCAGCG GATCGGCGTG AAGATCGCCA TCGACGACTT CGGCACCGGT
TACAGCTCCT TCGCCCAGCT CAAGTCGCTG CCGGCGGACG TCCTGAAGAT CGATCGCGGC
TTCGTCCGGG ATCTGGGCAC CGACTTCGAC GACCTGGCGA TCGTGCAGTC GATCATCGGT
CTGGCCCGCT CCCTGGGCCT GGACCTGGTC GCCGAAGGTG TGGAGACCGA GATCGCCGCA
TCCACCCTGG TCGACCTGGG CTGTACGCGG GCCCAGGGCT TCCTGTTCGC CGGTCCGCGC
CCGCCCGCGG AGATCGAGCA GATGATCCAG ACCGGCGTGT GCCCGCCGAT GGTCGATCTG
GACAGTGGAG ACACCGTGGA GACCGCGGCC CTGCGGGTGC TGCGGCCGGC GGCCGGGTTC
GACGGCCCGG CGGCGCCGAC CACCGCCGCC CGCCGCTTCC ACCCGCCAGG CGGCGGCTGA
|
|---|
| Protein sequence | MPSKQSLEEL VTQAATDLMG VTAVSLRGAT QNLLRELVDY FGVDTSFLRR NDHQIHASLL
VAEWPPRIDV PDPDPLALVY FEGADPTFAA SETLSHVTIT RPGELFGAEV DDSDYQELVR
RASGVQIGVS LAVVPMLGTH DTMGVLGFVK YGDREWTDAE INALRAVAGL LAQLQARVDA
EERLRHQAFH DELTDLANRR FLVEEITQRL EPGTGDPVGL IFMDVDRLKA LNSFFGHAAG
DQYLQILAGR LRERISARHM VARLGGDEFV VIMGGPTDEA TARALAEKLR QVANQPILVG
GEEVSRAVSI GVALGQPGQT SASELMNQAD QAMLEAKSRG GNEIGVFSAQ MRRANEIRTD
IELHIGTAIR HGALVLHYQP EVDLRDGRIL GVEALVRWPN PTLGLLQPGA FIDVVEATNL
AGELGRWVLG QACRQLREWQ LHYPERRLGM SVNVSPAQLI TLDFVATVAK TLADHELDGQ
WLTLEITEQA LVRDTDQALA TLRGLQRIGV KIAIDDFGTG YSSFAQLKSL PADVLKIDRG
FVRDLGTDFD DLAIVQSIIG LARSLGLDLV AEGVETEIAA STLVDLGCTR AQGFLFAGPR
PPAEIEQMIQ TGVCPPMVDL DSGDTVETAA LRVLRPAAGF DGPAAPTTAA RRFHPPGGG
|
|---|
| |