Gene Namu_0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_0033 
Symbol 
ID8445612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand
Start bp38984 
End bp40609 
Gene Length1626 bp 
Protein Length541 aa 
Translation table11 
GC content67% 
IMG OID645039184 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003199460 
Protein GI258650304 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones70 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCCCA AGCATGCCGC CCCCGAACCC GGGGCGGTCG ACGGGAGCGC CCCGCCCCCC 
CAGTTGACCA AGAACCAGTT GACCAAGAAC CCGGCCCCCA CCCCGGTCGC TGCCGACGAC
GACAAGCTGG ACGGCACCGT CTGGCGGATC GCCGGCGTCG TGGTCCTGGG CGCGATCATG
TCCATCCTGG ACGTGACCGT GGTCAGCGTT GCGCTGCCGA CGTTCCAGAC CACCTTCGAC
GCCAGCTACG CCACCGTCGC CTGGACGATG ACCGGCTACA CGCTGGCCCT GGCCACCGTT
ATCCCGCTGA CCGGCTGGGC GGCCGACCGG TTCGGCACCA AGCGCCTGTA CATGCTGGCG
TTGACGTTGT TCCTGCTCGG CTCCATCGCC TGCGGTCTGG CCTGGAGCAT CGAGTCGCTC
ATCGCCTTCC GGGTCCTGCA GGGCCTGGGC GGCGGCATGT TGATGCCGCT GGGCATGACG
ATCATGACCC ACGCGGCCGG CCCGCACCGG ATCGGCCGGG TGATGGCCGT GCTGGGCGTG
CCGATGCTGC TCGGCCCGAT CTTCGGCCCG ATCCTGGGTG GCTGGCTGAT CGAGACCGCC
AGCTGGCATT GGATTTTCTT CATCAACGTG CCGATCGGCA TCGTCGCGCT GATCGCCGCC
TGGCGGGTGC TGGCCAAGGA CGAACCGTCG CCGTCGGAAT CGTTCGACTT CGTCGGCATG
CTGCTGCTCT CGCCCGGTCT GGCGCTGTTC CTGTTCGGCG TCTCGACCAT TCCCGAGGAA
GGCACCTTCG CCTCGGCCAA GGTGATCATC CCATTGGTGG TCGGGCTGCT GCTGATGACC
GGCTTTGTCT TCCACGCCCT GCGCCGCCAG GATCACCCGT TGATCGACCT GCACCTGTTC
AAGCGCAAGC AGATGTCGGT CTCGGTCATC ACCATGTCGC TGTTCGCCAT CGCGTTCTTC
GGCGCGATGC TGCTGCTGCC CACCTATTTC ATCCAGGTCC GGGAGGAGAG CACGCTGACC
GCGGGGCTCC TGCTGGCTCC GCAGGGCATC GGCGCCATGC TGACCATGCC GATCGCCGGT
CGCCTGACCG ACAAGATGGG TCCGGGCAAG TTCGTCATCA CCGGCCTGTT CCTGATCCTG
ATCGGGATGA GCGTGTTCAC CCAGATCAGC TCGACCACGC CGATTCCGCT GCTGCTCGGG
GCGCTGTTCA TCAACGGCCT GGGCATGGGC ATGACGATGA TGCCGATCAT GACGGCGGCC
CTGGCCACCC TGCGGCACGC CGAGGTGGCC CGGGGCTCGA CACTGATGAA CATCGTGCAG
CAGTCGGCCG CCTCGGTCGG TACCGCGGTG ATGTCGGTCA TCCTGACCAA CCAGTTCCTG
AGCAAGCCGG CGATTCAGGC GGCCAAGGCC GCTCAGGAGA ATCCGGCGGC GATGGCCAAC
GTGCCGCCGG ACGTGCTGGC CCAGGCCAAG GCCCAGGTGC AGGAGCAGAT GGCCGAGGCC
TTCGGCACCA CCTTCTGGGT GGCGCTGGCC ATCCTGGTGG TCACCCTGAT CCCGGCGTTC
ATGCTGCCCC GCAAGGCCCG GGAGACCGTC GGCGAGGAGC CGGCGGCGCC GGTGGTCCTG
CACTGA
 
Protein sequence
MSPKHAAPEP GAVDGSAPPP QLTKNQLTKN PAPTPVAADD DKLDGTVWRI AGVVVLGAIM 
SILDVTVVSV ALPTFQTTFD ASYATVAWTM TGYTLALATV IPLTGWAADR FGTKRLYMLA
LTLFLLGSIA CGLAWSIESL IAFRVLQGLG GGMLMPLGMT IMTHAAGPHR IGRVMAVLGV
PMLLGPIFGP ILGGWLIETA SWHWIFFINV PIGIVALIAA WRVLAKDEPS PSESFDFVGM
LLLSPGLALF LFGVSTIPEE GTFASAKVII PLVVGLLLMT GFVFHALRRQ DHPLIDLHLF
KRKQMSVSVI TMSLFAIAFF GAMLLLPTYF IQVREESTLT AGLLLAPQGI GAMLTMPIAG
RLTDKMGPGK FVITGLFLIL IGMSVFTQIS STTPIPLLLG ALFINGLGMG MTMMPIMTAA
LATLRHAEVA RGSTLMNIVQ QSAASVGTAV MSVILTNQFL SKPAIQAAKA AQENPAAMAN
VPPDVLAQAK AQVQEQMAEA FGTTFWVALA ILVVTLIPAF MLPRKARETV GEEPAAPVVL
H