| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2529 |
|---|
| Symbol | |
|---|
| ID | 8420388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013224 |
|---|
| Strand | - |
|---|
| Start bp | 20925 |
|---|
| End bp | 21581 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645039128 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003199385 |
|---|
| Protein GI | 258406644 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 0.305462 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 127 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTG CCCCAGCCGT TCCCCAGTCC TCGCCGGCCA TCTTTCAGAC CGGGAAACTC
AAAATCAAAT ACCTCATGCC CGACGAGCTG CAACGGCTCA CGGACACCTG GCGCAAATGG
TTCGATGCCT CCCCGACACC GACCAAACGA CGAATCCGGG GCCGGCACTG GCTCATATTT
TTGACCTTGC GCCATACCGG GGCCAGGCTC GGTGAAGTGC TACAGATCCG CGACGATTTC
GACATCAACA CCCGGGAATC CGAGATCAGG GTCACAACCC TTAAACGCGG AACCGGCGAG
AAACGCCTGG TACCAGTTGT CCCGGAACTC ATCAGCGAGA TCGCCAGCTA TCTCATGGAC
TACCCCGAGA TCCGGGGGAA ACTATTCAGC CTGGATGCGT CGAATTTTCG AAAACGGTTT
TATGATTTGG CTGATCAGGC AGGGATGTTG GAGGAGGAGT ATATGGATGG GCGACGTGAG
CTTTTTCCAC ACCCACACAC CTTGCGCCAC ACTAGGGCCA TGGAGTTATT GAGTGCCGGA
GTGCCGGTCA CGGCGGTACA GGATTTGTTG GGACATTCCA GTCTGCTTAC GACTGCGCAA
TATCTTCGAC TGTCCGGGCA GGACGTGAAG AATACATTGC GCAGCAGGGG GCTATAG
|
|---|
| Protein sequence | MSIAPAVPQS SPAIFQTGKL KIKYLMPDEL QRLTDTWRKW FDASPTPTKR RIRGRHWLIF
LTLRHTGARL GEVLQIRDDF DINTRESEIR VTTLKRGTGE KRLVPVVPEL ISEIASYLMD
YPEIRGKLFS LDASNFRKRF YDLADQAGML EEEYMDGRRE LFPHPHTLRH TRAMELLSAG
VPVTAVQDLL GHSSLLTTAQ YLRLSGQDVK NTLRSRGL
|
|---|
| |