| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2479 |
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| Symbol | |
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| ID | 8420341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2843510 |
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| End bp | 2845291 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645039082 |
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| Product | putative sodium symporter protein |
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| Protein accession | YP_003199339 |
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| Protein GI | 258406597 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4147] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.025526 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGATT CAGTCAAAAT GTGGACCTTC ATCATGGTCT TTTGCACCTT TGGACTCTAC
CTGTATATCG CCTGGCGTTC GCGGGTCAAA GACACCAAAG GATTTTATGT TGCCGGAGGA
GGCGTTCCGG CGCTGGCCAA CGGCATGGCT ACGGGGGCCG ACTGGATGAG TGCGGCCTCG
TTCATCTCCA TGGCCGGCCT GATTTCCTTC ATGGGCTATG AGGGGTGCAT CTATTTGATG
GGCTGGACAG GAGGATATGT GCTTCTGGCC CTCTTTTTGG CCCCCTATTT ACGGAAATTC
GGTAAATTCA CCGTACCCGA TTTTGTCGGC GACCGGTATT ATTCGACCAC AGCCCGAGTT
GTGGCCCTGA TCTGCGCCAT TTTTGCCTCC CTGACCTATG TCGCAGGGCA AATGCGCGGC
GTGGGCATCG TTTTCAGCCG TTTTTTGGAA GTCGACGTAA CCACAGGGGT GGTCATCGGC
ATGGCCATTG TCTTTTTCTA CGCCAGTCTC GGGGGCATGA AAGGCATCAC CTGGACCCAG
GTCGCCCAGT ATTGCGTGAT GATCGTGGCC TTTCTGATCC CGGCGATCGC CATTTCCCTG
AAAATAACCG GACAGGCGGT TCCGCAACTC GGCTTCGGCG GGACCATCGC CTCGGGAAGC
AACGCTGGTC AGTACCTGCT GCAGACCTTG GACCAGATCA GCACGGATCT CGGATTTCGG
GAATACACCT CGGCCTTTGG CGCAGGGAAC AAATCGATGC TCGATGTGAC CGCTATCGCC
CTGGCCCTCA TGGTCGGTAC CGCCGGTTTG CCCCACGTCA TCGTCCGCTT CTACACCGTG
CCTTCGGTCC GTGCCGCACG GCTGTCCGCC GGATACGCCC TGCTGTTTAT CGCCATCTTG
TACACCACCG CCCCAGCCGT AGCTGGTTTT GCCCGCTACA ACATGATCAA CGCCTTAAAC
GAGACCCCGT ACGCCGAAGC CCCGGCTTGG TTCGCCAATT GGGAGGACTC CGGGCTGGTC
GCTTGGCTGG ACAAAAACGA CGACGGCCGG ATCCAATACC GGGCCGGAGC CGCCTTTTCC
GGCAAACCCG AATTTCGGGA AGCCAGAGGC TCCCATGGCC AGCGCCTGCT GAACAATCCC
CCGGGCCCGA CATCCAATGA ACTCTATGTC GACCGGGACA TCATGGTCCT GGCCAATCCG
GAGATCGCTG ATCTGCCGCC CTGGGTAGTA GCCCTGGTCG TGGCCGGAGG GTTGGCAGCT
GCTCTGTCCA CCGCTTCCGG GCTCCTGCTG GTCATCGCCT CCTCGATCTC TCACGACCTG
TATTACCGGA TCCTCAACAG GCAAGCCACG GAAAAACAGC GGCTGCGGCT GGGACGGATC
ATGATCGGCA TTGCTGTCAT CGTGGCCGGC TATTTCGGGA TCAACCCACC AGGATTTGTG
GCTCAGGTGG TCGCCCTGGC CTTTGGCTTG GCCTGTTCCT CATTTTTTCC GGTCCTGGTT
TTGGGGATCT TCTCCAAGCG TGTTACCAAG CAAGGAGCCA TCGCAGGCAT GATCACCGGG
ATTGGGTTCA CCATTCTCTA TATTGTCCAA ACCAAATTCC TGGGTATGGA TCCCTGGCTG
CTGGGCATCA GCCCGGAAGG GATCGGCAGT GTGGGCATGA TCCTGAATTT CACGGTGACT
CTGGGAGTTT CTGCGGTCAC TCCCCCGCCG CCGCCAGAAA TCCAGGAATT GGTCGAGCAT
GTGCGCACGC CTCGCGGCGC CGGAATGGCC ATCGACCACT AA
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| Protein sequence | MMDSVKMWTF IMVFCTFGLY LYIAWRSRVK DTKGFYVAGG GVPALANGMA TGADWMSAAS
FISMAGLISF MGYEGCIYLM GWTGGYVLLA LFLAPYLRKF GKFTVPDFVG DRYYSTTARV
VALICAIFAS LTYVAGQMRG VGIVFSRFLE VDVTTGVVIG MAIVFFYASL GGMKGITWTQ
VAQYCVMIVA FLIPAIAISL KITGQAVPQL GFGGTIASGS NAGQYLLQTL DQISTDLGFR
EYTSAFGAGN KSMLDVTAIA LALMVGTAGL PHVIVRFYTV PSVRAARLSA GYALLFIAIL
YTTAPAVAGF ARYNMINALN ETPYAEAPAW FANWEDSGLV AWLDKNDDGR IQYRAGAAFS
GKPEFREARG SHGQRLLNNP PGPTSNELYV DRDIMVLANP EIADLPPWVV ALVVAGGLAA
ALSTASGLLL VIASSISHDL YYRILNRQAT EKQRLRLGRI MIGIAVIVAG YFGINPPGFV
AQVVALAFGL ACSSFFPVLV LGIFSKRVTK QGAIAGMITG IGFTILYIVQ TKFLGMDPWL
LGISPEGIGS VGMILNFTVT LGVSAVTPPP PPEIQELVEH VRTPRGAGMA IDH
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