| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2459 |
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| Symbol | |
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| ID | 8420321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2820626 |
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| End bp | 2821525 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645039062 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003199319 |
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| Protein GI | 258406577 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.24992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCGC CCCAATTTCT CGAAATCACT CCTGAAGAAG CCAACAGCAA GGTCCTGTCT
GTGCTGCAAA ACCGCCTCGA CGGCCAGGTC CCTCGCAGTG CGCTCATGAA ATGGATTCGC
ACCGGACAGG TTCGGGTCGA TAAAAAGCGG ACCAAGCCCT TCGACCGGGT GCAGCCGGGC
CAGATTCTCC GCCTACCGCC CCAGGCGACG CTCAAATCCG CATCCTCTCC TGGGCCCCCG
CCCGCTCTCA AACTCGAGCG GATCGCGGAA ACCGAGACGC TTTTGGTCCT CGCTAAACCG
GCCGGACTTC CCGTCCAACC GGGCAGCAAA CACGGCGCCA GTCTGGTGCG CGAACTTGCC
AAAGCATATC CAGAAACCCC TTGGCCGCCC CAACCGGTCC ACCGCCTGGA TAAAGACACC
TCAGGAATCA TTCTGGTCGC AAAGCGCGCC GATGTCTTTC AAATCATACA ACAGGCCTGG
CAGCGCGGCG AGGTCCAGAA AGACTATCTG GCCTGGTTGG CTCCTGGAGA TGACGTGGGT
CCGGGGTGGC ATACCTGGCG TGACCGAATT GAGATTTGTC ACACCGACCG CGGTGAGAAA
ATGTGCTGTA CGGAAGGGGG TAAGGAGGCA ATCCTGCATC TGCGGCCTCT GCGCCGCAAC
AGTCTCGGGG AAATCTTGGT GGCGATCCAG TTGGAAACCG GTCGCAAGCA CCAAATACGG
GTGCAATCGG CCAACCGGGG ACTGCCTGTG GTCGGCGACC GGAAATACGG GCAGACTTCG
CAAAAAACAG GACTTATGCT CCATGCCTGG CGGTTGGGGT ACTCAGAGGC ACTCTGGACC
CATCTCCCAC CTTGGCACGG TGAGTACGCT GTTACTGCGG CGGATGTGGC GTTGGTATAA
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| Protein sequence | MSPPQFLEIT PEEANSKVLS VLQNRLDGQV PRSALMKWIR TGQVRVDKKR TKPFDRVQPG
QILRLPPQAT LKSASSPGPP PALKLERIAE TETLLVLAKP AGLPVQPGSK HGASLVRELA
KAYPETPWPP QPVHRLDKDT SGIILVAKRA DVFQIIQQAW QRGEVQKDYL AWLAPGDDVG
PGWHTWRDRI EICHTDRGEK MCCTEGGKEA ILHLRPLRRN SLGEILVAIQ LETGRKHQIR
VQSANRGLPV VGDRKYGQTS QKTGLMLHAW RLGYSEALWT HLPPWHGEYA VTAADVALV
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