| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2458 |
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| Symbol | |
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| ID | 8420320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2819295 |
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| End bp | 2820593 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645039061 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_003199318 |
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| Protein GI | 258406576 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCCTC TGGCTCTGGC CTTCTGCGGC ATCGTGGCCC TGCTGGCCCT CCTTTTTGTC
CTGCGCTTGC CGGTCGGCTT TGCGCTGGCC CTCGTAGGGT TTGCCGGCTT CTGGATGGCC
ATCAACCTCC GGGCAGCGCT TGGCATGGCT GGCACCGAAA CCTGGCAAAT CTTTTCTTCC
TACGGCTTTA CGGTGATTCC CCTGTTTATT TTCATGGGAC AGATCTGTTT TCACAGTGGG
GTCAATAAGC GCCTCTACCA CACCGCCTTC ACCTGGTTCG GGCCTATACG TGGCGGCCTC
GGAGTGGCCA CAGTCCTGGC CTGCGCCGGC TTTGCCGCCA TTTCGGGCTC GAATACCGCC
ACCGCGGCGA CCATGAGTAC GGTGGCCCTG CCTGAGATGG ATAAATACAA GTACCACCCG
GTCCTGGGCA GCGGCACGGT GGCCGCAGGC TCCACCCTGG GAGTCGTTAT TCCGCCCAGT
GTGATCCTTA TCGTAATTGG TCTGCAGACC GGGCAGCCCA TCGGCAAGCT GTTCTGGGCC
GCACTGATCC CCGGGGCGTT GTTGACCTTG CTGTTTCTGG TCACGGTTGT GATCGCCTGT
CGCGTCCGGC CTGACATGGC CCCGGCCGGT CCGCCGACCA CCTGGCGCGA AAAAGGGGCG
AGCTTACCGG GTTCAATCGA AATGCTCATC CTGTTCGGAC TGGTCATGGG GGGGCTGTTC
TGGGGGTGGT TCACTCCGAG CGAAGCCGGA GCTGCCGGAG CAGGCGGGGC ACTGGCCTTG
AGCTGCCTCA CGCGCCGCCT GAAATGGCCT GATTTTCTGG CGGCAGTCCA GGACACGCTC
AAGATCTCCT GTATGATCCT GACCATCGTG ATCGGGGCGG TTATTTTCGG TCGTTTTCTG
GCCGTTACCC GCCTCCCCTT TGCCCTGGCT CAGTGGGTCA CGGGATTGGA ACTGCCCGCG
GCGAGCATCT TGTTGTGCAT TCTGGGGATC TATGTCATCG GGGGGGCCTT GATGGACGCT
CTGGCCCTGC TGCTGATCAC ACTGCCCATC TTTTTCCCGG CTGCGCAAAC GTTGGGTTTT
GATCCTCTCT GGTTCGCTGT CCTGGTCACT ATGGTCACCA CTTTGGGGGC CATCACCCCT
CCCGTAGGGG TCAACGCCTT TATCATCAGT TCTGTGGGTC AGACACCGCT TGGCAATGTG
TACAAGGGAA CAGCCCTTTT TGCCCCGGCT TTTTTCCTCT GTCTCACCAT TCTTGCCCTT
TTCCCGAGTC TGGCCCTGTA TCTCCCGAAC AGTTTTTAG
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| Protein sequence | MSPLALAFCG IVALLALLFV LRLPVGFALA LVGFAGFWMA INLRAALGMA GTETWQIFSS
YGFTVIPLFI FMGQICFHSG VNKRLYHTAF TWFGPIRGGL GVATVLACAG FAAISGSNTA
TAATMSTVAL PEMDKYKYHP VLGSGTVAAG STLGVVIPPS VILIVIGLQT GQPIGKLFWA
ALIPGALLTL LFLVTVVIAC RVRPDMAPAG PPTTWREKGA SLPGSIEMLI LFGLVMGGLF
WGWFTPSEAG AAGAGGALAL SCLTRRLKWP DFLAAVQDTL KISCMILTIV IGAVIFGRFL
AVTRLPFALA QWVTGLELPA ASILLCILGI YVIGGALMDA LALLLITLPI FFPAAQTLGF
DPLWFAVLVT MVTTLGAITP PVGVNAFIIS SVGQTPLGNV YKGTALFAPA FFLCLTILAL
FPSLALYLPN SF
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