Gene Dret_2453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2453 
Symbol 
ID8420315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2813334 
End bp2815151 
Gene Length1818 bp 
Protein Length605 aa 
Translation table11 
GC content59% 
IMG OID645039056 
ProductCl- channel voltage-gated family protein 
Protein accessionYP_003199313 
Protein GI258406571 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATAC TCCGGACCGT GCGTGAAACC CTGACCTTTA CTACTGAAAC CTCGCCTCTG 
AAACGCACTG GAAAATGGCT CCTGGTGTAC ATCCTGATCG GAGTCATTGC CGGACTGGGT
TCCATCCTGT TCCACACGCT TTGCGAATTG GGCATGCACT TTTTTCTGGA CGGCCTGGCC
GGATATCGTC CACCTGTTCC GGCTGGCGAG CATGCCTTGC TGCCCCCGAC AGACACCCCC
TTTTCCCGCT GGATTTTACT TTTCCTCCCG GCCCTGGGCG GACTGGTCAG TGGCTGGCTG
GTTTACACCT ACGCCCCGGA AGCTGAAGGC CACGGTACCG ACAGCGCCAT CGACGCCTAC
CACAACAAAG GCGGACAGAT CCGGGGCCGG GTACCGATCA TCAAGACCGT GGCCTCGGCC
ATTACCTTGA CCACTGGTGG CTCCGGAGGG CGGGAAGGCC CGATCGCCCA AATCGGGGCC
GGATTTGGCT CATTTCTGGG CAATCAGCTC GGCTTGTCCG AACGCGAGCG CCGGATCATG
CTCGCCGCAG GGGTAGCGGC CGGTGTCGGG AGTATCTTTC GCGCCCCCAT GGCCGGGGCG
CTGTTTGCGG CTGAAGTGCT CTACCGTGAA CCGGAATTCG AGTCGGAGGT CATCATTCCC
GCTGGCATCG CTTCGGCGGT GGCCTATTGT ATTTTCTGCC TTGTCTACGG CTGGGGCTCC
CTCTTCCACG CCCCGAATTT CACGTTCACC AATCCCCTTG AACTAGGGCC GTACGCTCTT
TTGGCCCTTG TTCTGACGGC CGGGGGCTTC GTGTACGTCA AATGCTTCCA CGGCGTTCAC
GCGCTGTTTG CCAAAATCCC TATCAAAAAC CACTTCAAGC CGGCCATTGG CGGTCTGCTC
ACCGGGGGCA TCGGCTTTTT CCTGCCCCAG ACCCTGGCTT TCGGCTACGG GGTCGTCCAA
CAGGCGATCA ATGGAGAACT CGGCATTGCC CTCCTGCTCG GCGTAGCCCT GGGCAAAATC
CTGACCACGT CCTTCACCAT CAGCTCCGGC GGCAGTGGCG GCGTCTTCGG ACCATCCGTG
GTCATTGGCG GCGCGTTGGG CGGCGGAGTG GGGCAAACAG TGGACGCGCT CCTTCCGGGC
CTGATCGACC CCGGCGCCTT CATCATCGTT GGCATGGCCG GTTTCTTCAC CGCGGTGTCC
AACACCCCGG TCTCGACAAT CATCTTCGTC AGCGAGATGA CCGGGTCCTA CCACCTGCTT
CTGCCCAGCC TCCTGGTCTG TTTCCTGTGC CAGATCCTGG CGCAGAAGGT GACCATCTAT
GTCGAACAAT ACGCCAACAA GCTCCAGTCT CCGGCCCATG CGGGCGAGTT TTTCGTGGAC
GTCCTCCAAT CCTTCCGCGT TCGCGATCTG CTCGGTCAAA TCCGCAAGTT CGTGACCGTT
CCCGAGGGCA TGTCGTTTGC CAAGTTCAAA GAATTCTTCT CCGACACCAC CCAGGATTAC
TTTCCTGTGG TCAATACCCG CAATGAACTC AGCGGCATTT TCACCAACCG CGATATCCGA
ACTATCCTTT TTGCTCCGGA GGTCGACGAC CTGGTTGTGG TCAAGGACAT TGCCACGACA
GACCTGATCA CCACCAACCC GGATGAGGAC CTGGGCACGG TGATGACCAA ATTCACCAAA
AAGAACCTCG ACTGTCTGCC CGTCGTCGAT GTCCAAAACC CGAACCATCT TCTCGGCATG
CTCAGACGGC GGGAAGTGAT CGCTTTTTAC AACAATGAAC TGGCGAAGAT GAAACGCCAA
GGCAACTCAG AGCGTTAA
 
Protein sequence
MDILRTVRET LTFTTETSPL KRTGKWLLVY ILIGVIAGLG SILFHTLCEL GMHFFLDGLA 
GYRPPVPAGE HALLPPTDTP FSRWILLFLP ALGGLVSGWL VYTYAPEAEG HGTDSAIDAY
HNKGGQIRGR VPIIKTVASA ITLTTGGSGG REGPIAQIGA GFGSFLGNQL GLSERERRIM
LAAGVAAGVG SIFRAPMAGA LFAAEVLYRE PEFESEVIIP AGIASAVAYC IFCLVYGWGS
LFHAPNFTFT NPLELGPYAL LALVLTAGGF VYVKCFHGVH ALFAKIPIKN HFKPAIGGLL
TGGIGFFLPQ TLAFGYGVVQ QAINGELGIA LLLGVALGKI LTTSFTISSG GSGGVFGPSV
VIGGALGGGV GQTVDALLPG LIDPGAFIIV GMAGFFTAVS NTPVSTIIFV SEMTGSYHLL
LPSLLVCFLC QILAQKVTIY VEQYANKLQS PAHAGEFFVD VLQSFRVRDL LGQIRKFVTV
PEGMSFAKFK EFFSDTTQDY FPVVNTRNEL SGIFTNRDIR TILFAPEVDD LVVVKDIATT
DLITTNPDED LGTVMTKFTK KNLDCLPVVD VQNPNHLLGM LRRREVIAFY NNELAKMKRQ
GNSER