| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2427 |
|---|
| Symbol | |
|---|
| ID | 8420287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2778973 |
|---|
| End bp | 2782032 |
|---|
| Gene Length | 3060 bp |
|---|
| Protein Length | 1019 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645039028 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_003199287 |
|---|
| Protein GI | 258406545 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000179675 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCG GACTGGCCTG CATCCGCAAC AGCCGCACGG CTACCGCCAT CCTGTTTTTT
CTTATTTTCG CTGGGATATG GACCTATTGG ACCATTCCCA AATTGGAAAA TCCTGAATTC
ACCATCCGCA CCGCCGTGGT CATGACCCGC TTTCCCGGCG CGACCCCGTA CAAGGTCGAA
TCCCTGGTCA CCGACAAACT TGAGCAGGAG ATCCGGGACA TGGAAGAGGT CAAAACCATC
ACCTCGCAAT CCATGTCCAA TGTCTCGATC ATCCATGTAG AGTTCCAAGA CAAATATTCG
AATATGGACC CCATCTGGCA GCGATTGCGC AACAAGGTCC GCGATGCCCG CCCTGCACTG
CCGGATGGGG CGCTCCCGCC GGTGGTCAAC GACGAATTTG GGGATGTCTA CGGCATACTC
CTCGCCCTGA CCGGTTCGGA ATATTCCCCC CGGGAATTGG AGACCCATGC CGAGACCCTG
CGCGACGCCC TGCGCCAACT CCCTCAGGTC GCCAAAGTCG AGATCCACGG TGTGCAGGAG
GAGCGGATCT ACATCGAATT TTCCAACAGC CGCTTGGCTC GCCTGGGGCT TTCCCCGTAT
CAGCTTTTGA CTCTGCTGGA GGCGCAAAAC AGCGTCCAAC CCAGCGGTAG CAGCCGCCTC
GGTCCCGAAC GAGTCATCCT GGAGACCAGC GGCGAATTCC AGAGCGTTGC TGATCTTCGC
CGCACCGCCA TCCGGCTGCC GGGGGCCTCT GAATCCATCG CCCTGGAGGA TATCGCCACC
GTACACCGGG GCTATGCTGA CCCTCCCGCC TCGCTGACCC GTTACAACGG TCGCCCGGCG
CTTGTTGTGG CCGTCAGCAT GACCGAATCC GGGAATATCG TTGAACTGGG CGACAAAGTG
GATGCGCTTT TGGCCCAAAG CGAACGTTTC CTGCCCCTGG GACTCGATGT CCACAAACTC
ATGTTCCAGT CCAAATACGT CCAGCGCTCG ATCACCGACT TTACGTTCAA CCTCCTGGAG
GCTTTCGTGT TCGTGGTCGT GGTCATGTTT TTCTTCACCG GACTGCGAAC CGGCCTCATC
GCGGCGATGC TCGTGCCTCT GGCCATGCTC TCCTGTATCT TTCTGCTGCC CCTTTTTGAC
GTCAAACTCC AGCAGATCTC TATTGCCGCC TTGATCATTT CCCTTGGCAT CCTTGTCGAC
AACGGGGTCG TGGTCAGCGA AAATCTTCTG GTACGGTTAC GTCAGGGGCA GGACCGGCTG
GAAGCGGTCA AGGAAACCGT CTCCCGGCTC TGGCTGCCCT TGCTGGTCGC CTCGCTGACC
ACCATCTTCG CCTTCTTACC GATCCCCCTG GCCCAATCGG ACACCGGGGA ATACACCTTT
TCGCTGTTTG TTGTGGTCTC GCTGACCTTG CTCGCCTCCT GGCTGCTGTC CCTGAGTTTC
GTTCCCCTGA GCGCGTACTA TTTCCTGCAC CCCCAGAAAA AAGAGCAACG CTTCCACAAC
CGGTTTTACC AAGGATATCG TGCATTGCTG AATACGGCCC TGCGCCACCG TTTACTCAGC
GTCGCGGTGG TTGTGCTCCT TGTTGCTGCG GCCGTCTGGG GATTTCGTTT TGTGCCCACG
GTCTTTTTCC CTCCGAACGA ACGCGAAGTC CTAACCCTGG ATTTCTGGCA GCCTTACGGC
ACGGACATCC GGAACACCGC CGAACGGGCC GACGCCCTGG CCCAATGGAT GAACAACGAC
CCCGCCATCG AAACCGTCGG GACGTTTATC GGGAGCGGCG GGCCGCGTTG GTATCTCTCC
CTGGATATCA AGCAGGACAA TCCGAACTAC GCTTTCTTCG TCATCAAAAC TGTGGACACC
GAAACAACCG CTGCCGCCAA AAACCGCCTG GAAGAGGTCT TACAACGACG TTTTCCGGAC
ACCCGCTTCT CTTTGCGCCG ACTCGAATAC GGTCCCCCTG TGGGCGCTCC CATCCAGATC
CGGCTCAGCG GTCAGAATAT CGAACGGGTC TATACGATCC GAGACCGGAT CGTGAAAATC
CTGCATCGTG TTCCAGAAAT CACCACGGTC TGGGACGATT GGGGGGAATG GGCCAAAAAA
ATCGCCGTCG AGGTTGACCA GGAACGAGCC AAGAAGGCCG GGTTCACTTC CAGGGACATC
GCCACCTCGC TGCTGGCCCA AATGTCCGGC ATCGAGGCCA CCCAATATCG CGAAGGTGAT
GAGGTCATCC CCATCGTGCT CCGCTCGCAG TACGATATCC GCGACAATCT CCACCGCCTC
GAAGATATCA ATGTCTATGC CCGTTCGGGA CAAGGGTCGG TCCCTTTGGC CCAACTGGCG
AATCCGGAAC TGACCTGGCA ACCGAGCAAT ATCCGGCGCC GGGACACCGA ACGGACCATG
ACCATCAAGG CCGACATCAC GGACAGCGCA TTCGCCAGCC AGATCCTGGA AAAGCTCAAA
CCCGAGTTGG ACACGTTGCG CCGGTCAGCG ATCTTTCCCA CCGACTTCAC TCTCGAATAT
GGCGGCGAAT TCGAACAGTC CGCAGAGGCC AACTGGTCTA TCCTGGTCAA TATTCCCCTG
GCTGCCGGAC TGTTGCTTTT AGTCCTGATG CTCCAGTTCA ACTCCCTGCG CCGAGTGGGC
ATCATTGTCT TGACCATCCC ACCCATGAGC GTCGGGGTCA CGGCCGGCCT GATCATCACC
CAGGCGCCCT TCGGGTTCAT GGCCATGCTG GGCCTCATCT CTCTGGTGGG CATCCTGGCC
AACAACGGCA TCATGCTTCT GGACCAGATC GAGTTGGAGC GCGTCCGGCA CAACGACGCC
GCAACGGCTC TGGTCACGGC CTGCCAGAAA CGTTTGCGCC CCATCTTTAT GACCGCTTGC
ACAACCATTC TCGGGCTGGT CCCCTTGTCC CTGCAAGGCG GGGAACTCTG GCGCCCGATG
GCCAACACCA TCATCTTCGG CCTGGCCTTT TCGACACTCT TGACCCTGGT CCTGTGTCCG
GTACTCTATG CAGTGTTCTT TCATATCCAG GCGCCCCGCA GAAGCGCCAA GGAGGCATAA
|
|---|
| Protein sequence | MNLGLACIRN SRTATAILFF LIFAGIWTYW TIPKLENPEF TIRTAVVMTR FPGATPYKVE
SLVTDKLEQE IRDMEEVKTI TSQSMSNVSI IHVEFQDKYS NMDPIWQRLR NKVRDARPAL
PDGALPPVVN DEFGDVYGIL LALTGSEYSP RELETHAETL RDALRQLPQV AKVEIHGVQE
ERIYIEFSNS RLARLGLSPY QLLTLLEAQN SVQPSGSSRL GPERVILETS GEFQSVADLR
RTAIRLPGAS ESIALEDIAT VHRGYADPPA SLTRYNGRPA LVVAVSMTES GNIVELGDKV
DALLAQSERF LPLGLDVHKL MFQSKYVQRS ITDFTFNLLE AFVFVVVVMF FFTGLRTGLI
AAMLVPLAML SCIFLLPLFD VKLQQISIAA LIISLGILVD NGVVVSENLL VRLRQGQDRL
EAVKETVSRL WLPLLVASLT TIFAFLPIPL AQSDTGEYTF SLFVVVSLTL LASWLLSLSF
VPLSAYYFLH PQKKEQRFHN RFYQGYRALL NTALRHRLLS VAVVVLLVAA AVWGFRFVPT
VFFPPNEREV LTLDFWQPYG TDIRNTAERA DALAQWMNND PAIETVGTFI GSGGPRWYLS
LDIKQDNPNY AFFVIKTVDT ETTAAAKNRL EEVLQRRFPD TRFSLRRLEY GPPVGAPIQI
RLSGQNIERV YTIRDRIVKI LHRVPEITTV WDDWGEWAKK IAVEVDQERA KKAGFTSRDI
ATSLLAQMSG IEATQYREGD EVIPIVLRSQ YDIRDNLHRL EDINVYARSG QGSVPLAQLA
NPELTWQPSN IRRRDTERTM TIKADITDSA FASQILEKLK PELDTLRRSA IFPTDFTLEY
GGEFEQSAEA NWSILVNIPL AAGLLLLVLM LQFNSLRRVG IIVLTIPPMS VGVTAGLIIT
QAPFGFMAML GLISLVGILA NNGIMLLDQI ELERVRHNDA ATALVTACQK RLRPIFMTAC
TTILGLVPLS LQGGELWRPM ANTIIFGLAF STLLTLVLCP VLYAVFFHIQ APRRSAKEA
|
|---|
| |