Gene Dret_2409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2409 
Symbol 
ID8420269 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2758163 
End bp2758936 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content63% 
IMG OID645039010 
ProductPrepilin peptidase 
Protein accessionYP_003199269 
Protein GI258406527 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0391481 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTTG CCTCGGTTTT TTTTCCTCTG CTTGCGCTCT TTCTCGGCCT GGTGCTGGGC 
AGCTTCTATA ACGTCTGCAT CCACCGCTAC CTGAGCCAAA CATCCATTGT CTGGCCCGGC
TCGCATTGCC CGCAATGCGG TCACAGGCTG AGCTGGTGGG AAAATATTCC GCTCGTGAGT
TTTCTCGTTT TGCGCGGACG CTGCCGTGCC TGCCGCACCC CGATCAGCTG GCGCTATCCC
CTGGTCGAGG GCCTTTCCGG ACTCTGGGCC CTGGCCCTGG CCTGGCAATT CGGTCCCGGC
ACCGCCTGGC TGGTGTATAT GGGCTTCGGC GGACTGCTCA TTGTGGCCAG TTTCATTGAT
CTGGACAGCT TCATCCTCCC CGACCGTCTG ACGCTGCCCG GCGGGCTCCT GGCCCTGATC
GCGGCACCGA CGCTGCTGGG GCTGTCCTGG AGTTCGGCAG CCATCGGGGC CGTGGCCGGA
GCGGGCACCT TCTGGATCCT GCAACAGGGG TACAAACTCC TGCGCGGGGT CGAAGGACTG
GGCACCGGGG ACATCAAACT CATGTTCCTG CTCGGTGGAC TGCTCGGCTG GCAATCCCTG
CCCCTGGTGG TCTTTCTCGG CGCCCTGAGT GGTCTGGGCG TCAGCGTGGT CTACCTTGTC
CGGGACCGCA GCCAAGGTAT GCAGACCGCC ATCCCCTTCG GCCCATTTTT GAGCCTGGGC
GGGATGCTGA CAATCCTCTT CGGCCCATCA CTTCTGCAAT GGTATCTGGG CTGA
 
Protein sequence
MDLASVFFPL LALFLGLVLG SFYNVCIHRY LSQTSIVWPG SHCPQCGHRL SWWENIPLVS 
FLVLRGRCRA CRTPISWRYP LVEGLSGLWA LALAWQFGPG TAWLVYMGFG GLLIVASFID
LDSFILPDRL TLPGGLLALI AAPTLLGLSW SSAAIGAVAG AGTFWILQQG YKLLRGVEGL
GTGDIKLMFL LGGLLGWQSL PLVVFLGALS GLGVSVVYLV RDRSQGMQTA IPFGPFLSLG
GMLTILFGPS LLQWYLG