| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2404 |
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| Symbol | |
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| ID | 8420264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2751447 |
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| End bp | 2753984 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645039005 |
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| Product | DNA polymerase I |
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| Protein accession | YP_003199264 |
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| Protein GI | 258406522 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.405127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCCG TAAAATCCAG AATGGGCTGG GACACGGAAC CGCTGTACCT CATTGACGGA
AGCGCCTATC TCTACAAGGC CTTTTACGCC TACCCCGATC TCCAGCGCTC CGACGGGTTC
CCAACCAACG CCCTGTACAT CCTGACCCGC CTGCTTCTGA AACTGCTCCA GGAAGAGCAA
CCGGTGTACG CCGCTTTTTT CCTGGACGGC AAAGGCCCAA CTTTCCGCCA CGAGCTGCTG
CCGAGCTATA AAGGCCACCG CCCCCGCATG CCCGAGGATC TCGCCGCCCA GATCGGTCCG
CTGAAGACCC TGCTCGACGC CCTGGGGCTG CCGAACGAGG TCCCCGAAGG CCTCGAAGCC
GACGACATGA TCGCCTGCCT GAGCCGCCGC TTCCGGGACC AGCGGCCCAT TGTCATCATC
GGCGGCGACA AGGACCTCAA CCAATGTCTG GCGCCGCAGG TCTGCGTCTG GGACCCGAGT
GGCAAACAGG AAAAGCTGGT CACGGCCGAC TCTTTTGCAA AACAATTCGG GTTCGCGCCG
ACTATCTGGC CCGATTATCA AGCCCTGGTG GGAGATTCCA GCGACAACAT CCCTGGCGTG
CCCGGCGTCG GACCGAAAAC GGCCGAAAAA TGGCTCAAGC GGTTCCCTGG CCTTGAAACA
CTGCGCGACA ACCGCGAACG ACTCTCGGTC AAGGAGCAGG AGAAACTCGT TCCCCATCTG
GACGATATTT TCACCTACCG CCAACTGACA CGCCTGCGCA CCGATTGCTG TGCGGAGCGG
GACCTGGATG GTTTTGCCGT CCAGGGTCAG GACACCGGCG CCTTGCGCAG CTTTCTCCAG
GAATACGAAT TCCGCTCGCT GCTCCGGGAC CATTTCCGGG AGGAGGGAGC TGCGAAACAG
GAAACCAACG CCCGGATCGC GGCGAGCACA ACAGAGATCG ACCCTGACTC GCTCGCCGCG
TGCGAAGTTG GCCTGTATCC GGATGGCGAG AGCTTTGTCC TGGCGCTGGC AGGGAAGGAA
TACCGCCCCG ACTGGGACAT CGAGCACTGG GTGGACCACC TGTCCCGGGC CGAGCGGGTC
TATCTGCCTT CCCTGAAAGA CCTTCTGGTC GCCGACAGCG CCTGGGAAGG GCTGCCCTAT
GCCCGCTGTT TTGATCTCAG CCTTGGCGCC TATCTTCTGG ATCCTGAACA GCGCTCCTAT
TCCTGGGACA AAATCCGGCA ACGCCACCAG AACCAGCTCG AGACCCATCC GGACAACAAC
GCCCTCTCGA TTATGGAAAC CGGCAGGATT TTGCGCCGCG AACTGGCCAA CAGCGAGTTG
CTCTCGCTGA TGCAGGATAT CGAGCTCCCC CTGGTCGGCG TGCTGGTCCG CATGGAGAAA
CGTGGGTTGG CCATCGATCT GGAAGCCTTC CGTCGCTTCC TGGACGAGGT CCAGGAGGAA
CTCGACGGTC TGACCCACGA GATCTATGAT CTGGCGGGCC AGGAATTCAA CCTCCGCTCC
AGCCAGCAGA TGGCCCAGGT CCTGTTCGGG GACCTGGAAC TGCCGACAGG ACGCAAAACC
CCCGGCGGTG TGCCGTCCAC CTCCAGTCAG GTCCTGGAAG GGTTGCGCAA TGTGCACCCC
ATTATTCCCA AGATCCTGCG CTTTCGGACC TTGGAGAAAT TGCGGTCCAC CTATCTGGAG
CCCCTGCCCC AGAAAGTGGA CGATACCTCC CGGCTGCACA CCCACTTCAA CCAGCTGGCC
ACGGCCACCG GCCGGTTGTC GAGCAGCGGC CCGAACCTCC AGAACATCCC CATCCGCGGC
GAATTCGGCC CCCGCATGCG GCAATGTTTT GTGGCCCCGG AGGGCAGCCG GCTGGTGGCG
GCCGACTACT CCCAAATCGA ACTCCGGGTC CTGGCCCACC TCTCCCAGGA CCCCACCCTC
CTGGAGGCCT TCACCCAAGG CGAAGACATC CACAGCCGCA CAGCCGCCGT GATCATGGAC
ATCGCCGACG AACACGTCGA CAGCGAAGCC CGTCGTCAGG CCAAGACCAT CAATTTCGGC
CTTCTTTACG GCATGGGGCC CCAAAAACTC TCCCGGGAAC TCGGTATCTC CCTCAATGAG
GCCAAAACCT TCATTCAACG GTATTTCGAT CGCCTGCAAG GGGTCAGCGC CTTTTATGAA
CGCATCGAAG ACGCGGCCAA ACAGCACGGG TATGTCACCA CCTGGGCCGG CCGCAGACGG
CTGCTGCCGG ATATCAATTC CCGCAATGCC AACCTGGCCC AGCAGGCGCG GCGGATGGCT
GTGAATACCG TCGTCCAGGG CAGTGCGGCT GACATCATCA AAATGGCCAT GATCGAGGCC
GACGGCGACA CGGAGCTTGC TGATGCCGGC GCCCGCCTGA CCCTGCAAGT CCACGACGAA
TTGTTGCTCG AAGTGCCCCG TGAGGCAGCC GAAACAGCAG GAAAGCGCCT GGCCGCAATC
ATGGCCTCGG TGGCGGACAT GGACGTGCCG CTGGCTGTAG ACTGGGGAGT GGGGACCAAT
TGGGCTGAAG CGCACTGA
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| Protein sequence | MTPVKSRMGW DTEPLYLIDG SAYLYKAFYA YPDLQRSDGF PTNALYILTR LLLKLLQEEQ
PVYAAFFLDG KGPTFRHELL PSYKGHRPRM PEDLAAQIGP LKTLLDALGL PNEVPEGLEA
DDMIACLSRR FRDQRPIVII GGDKDLNQCL APQVCVWDPS GKQEKLVTAD SFAKQFGFAP
TIWPDYQALV GDSSDNIPGV PGVGPKTAEK WLKRFPGLET LRDNRERLSV KEQEKLVPHL
DDIFTYRQLT RLRTDCCAER DLDGFAVQGQ DTGALRSFLQ EYEFRSLLRD HFREEGAAKQ
ETNARIAAST TEIDPDSLAA CEVGLYPDGE SFVLALAGKE YRPDWDIEHW VDHLSRAERV
YLPSLKDLLV ADSAWEGLPY ARCFDLSLGA YLLDPEQRSY SWDKIRQRHQ NQLETHPDNN
ALSIMETGRI LRRELANSEL LSLMQDIELP LVGVLVRMEK RGLAIDLEAF RRFLDEVQEE
LDGLTHEIYD LAGQEFNLRS SQQMAQVLFG DLELPTGRKT PGGVPSTSSQ VLEGLRNVHP
IIPKILRFRT LEKLRSTYLE PLPQKVDDTS RLHTHFNQLA TATGRLSSSG PNLQNIPIRG
EFGPRMRQCF VAPEGSRLVA ADYSQIELRV LAHLSQDPTL LEAFTQGEDI HSRTAAVIMD
IADEHVDSEA RRQAKTINFG LLYGMGPQKL SRELGISLNE AKTFIQRYFD RLQGVSAFYE
RIEDAAKQHG YVTTWAGRRR LLPDINSRNA NLAQQARRMA VNTVVQGSAA DIIKMAMIEA
DGDTELADAG ARLTLQVHDE LLLEVPREAA ETAGKRLAAI MASVADMDVP LAVDWGVGTN
WAEAH
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