| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2376 |
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| Symbol | |
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| ID | 8420236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2715395 |
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| End bp | 2716921 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645038977 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003199236 |
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| Protein GI | 258406494 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0157817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGGGT TTGTCAAGAA AAACGTGGTC TTCTTCACGG CCTGGACGAT TTCCCTGGCC
ATTATCGGCA TCGGTGTCTT TGATCCCGAT GTGCTGGACT CTGTCTCGGC GCTGCTTCAT
GCCTATATCA TTGATAACTT CGGTTGGGGC TATCTCCTGG GCTCCCTGTT TTTTCTCGTC
TTCAGCGTCG TTCTTGCCAG TAGCCGCTTC GGCCGGCTCA AACTCGGCCA CGATCACGAG
AAACCGCAGT ACAGCTATTT CGGTTGGTTC AGCATGCTCT TTGCCGCGGG TATGGGCATC
GGCCTCATTT TTTGGGGAGT CGCCGAACCA TTGAGCCACT TCGCTCACCC TCCGGGGTAT
ATCGAGCCCC AATCCGGGGA TGCGGCCGCC TTTGCCATGC GCCACAGCTT CTTCCACTGG
GGTTTGCACC CGTGGGCGGT GTACATCGTC ATGAGTTTGT CCGTGGCCTA TTTTTCGTTT
CGCCGCGGCA TGCCGCCGCT GATCTCCAGT TGTTTTTATC CGCTTCTTGG CGAGCGGATC
TATGGGCCGC TGGGGCATCT CATCGACATT CTCTCGGTCC TGGCGACAGT CTTCGGTATC
GTGACCTCCT TGGGGCTGGG CGCCTTGCAG ATCACCAGCG GGCTGGCCAG CGTCACCCCT
CTGCCGGACG CCTTTTCGAC CACATTGGGG GTCATCGGCA TCGTCACCGT GCTCTTTATG
ATCTCGAGCA TGACCGGCCT GGACAAGGGC ATCCAGATCC TGAGCAAGAC GAATATATTG
CTGGCGTTGA TGCTGTTGGC GTTCATGCTC ATTGTGGGCC CGACAGCCTA TATCTTCAAT
GTGCTGACCA CCACCTTGGG CGGCTATTTC AGTGCCCTTC TGGATATGAG CCTCTCCAGT
AATCCCTTCC AGGGGTATGA ATGGACCAAG TCCTGGACCC TTTTCTACTG GGCGTGGTGG
ATTTCCTGGG CCCCGTTCGT GGGGCTGTTC GTGGCCAGTA TCTCCCGCGG GCGGACGGTC
CGGGAGTTCA TCCTCGGGGC CATGCTCGTG CCGACCCTGC TGACCTTCAT CTGGTTCAGC
GTCTTCGGCG GAGCAGGCCT CCATCTTCAG ATTGAGGGCC AGATCGATAT CGCTGGCAAG
GTGGCCGAGA ATGTCTCCGT GGCCCTGTTC CAGCTCTTCT CCTATTACCC CTTGAGCGGG
GTCCTGACCA TGATTGCGGT TTTGCTGCTG ATGGTCTTTT TTATCACCTC CGCCGATTCC
GCGACCTACG TCCTGGCCAT GATGACGTCC GGCGGGGCGC TGCGCCCTTC GAACTGGAAG
AAGATCAGCT GGGGCGTAAC CGTTTCGGCC ACCGCCTGCA TCCTCCTGTT TTCCGGGGGC
CTGGAGGCAT TGCAGCGCAT GTCCATCACG GCGGCCCTGC CGTTTACGAT CATCATGCTC
GTTTTGTGTT ATTGTCTGTG GCTGGGCATG CGCTATGAAT GGCGCCAGCC GCATACCAAG
ACCATGGATC TGGACGAGGA GGGCTGA
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| Protein sequence | MRGFVKKNVV FFTAWTISLA IIGIGVFDPD VLDSVSALLH AYIIDNFGWG YLLGSLFFLV
FSVVLASSRF GRLKLGHDHE KPQYSYFGWF SMLFAAGMGI GLIFWGVAEP LSHFAHPPGY
IEPQSGDAAA FAMRHSFFHW GLHPWAVYIV MSLSVAYFSF RRGMPPLISS CFYPLLGERI
YGPLGHLIDI LSVLATVFGI VTSLGLGALQ ITSGLASVTP LPDAFSTTLG VIGIVTVLFM
ISSMTGLDKG IQILSKTNIL LALMLLAFML IVGPTAYIFN VLTTTLGGYF SALLDMSLSS
NPFQGYEWTK SWTLFYWAWW ISWAPFVGLF VASISRGRTV REFILGAMLV PTLLTFIWFS
VFGGAGLHLQ IEGQIDIAGK VAENVSVALF QLFSYYPLSG VLTMIAVLLL MVFFITSADS
ATYVLAMMTS GGALRPSNWK KISWGVTVSA TACILLFSGG LEALQRMSIT AALPFTIIML
VLCYCLWLGM RYEWRQPHTK TMDLDEEG
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