| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2340 |
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| Symbol | |
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| ID | 8420200 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2663335 |
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| End bp | 2664843 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645038942 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003199201 |
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| Protein GI | 258406459 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATAG ACTTCTCCTC CCGACGCCCC TTTTCTGGGC CACTGCTCAT GGGGCTGACA
ATCGCCCTGT CGGCCCTGCT CTGCGGATGT GCCGCGGTAG GCCCAGATTA CAAAGGGGCT
TCCCTCGAAG CTCCCCAAGG GTGGAACGCT GAAATGGAAA AAGGGCTCCA GGCCACCCGG
CCCCAGGACA CGACGTTGAG CACCTGGTGG AAGACCTTCG ACGATCCTGT TCTCAACCAA
GTTGCCCAAA AAGCTGTTTC CGGGAACCTG GATCTGAAAA GCGCTGTCTC CCGTCTCAGG
CAAGCGCGCC TCAAACGCGG CATCTCAAGC GCAGGCCGTT ACCCGACGCT CAGCGGCAAC
GGCCAATTCC AGCGCCAACA CATCCGCGAA AACGCCGGCC CTCCCAACGG CGGCGACGAG
GTGGACTACT ACAACGCCCA GTTCGACGCC GGCTGGGAAT TGGATATCTT CGGTGGCATC
CGCCGCTCGG TCGAGGCCGC CCAGGCCGAG CTCGAAGCCA ACCGCGCCGA TGTCAACGAT
GTCCTGACGA GCCTGCTGGC CGAAGTGGCC CTGAATTATA TTGAAGTCCG GACCTACCAG
CACCGGTTGT CCATCACCAA GGCCAACATC GCTACACAGG AAAAGACGTA CGAGTTGAAC
TCCTCACGCT ATGAAGCCGG GCTGATCAAT GAATTGGCCG TACAACAGGC CCTGCGCAAT
CTCGAGCGGA CCCGGGCCCA AGTAGCCCGA CTGGAAAACG GGCTTCAAGC GGCCAAAAAC
CGCCTGGCCG TCCTCCTTGG CCAGTCACCG GGCTCTTTGT CGGCTCTGCT TACGCCCGTT
CGCCCCATGC CGGAGGTCCC GGCACAAGTA GCCGTGGGCA TTCCGGCCGA GGCCATGCGC
CGCCGCCCGG ACATCCAGCG GGCCGAACGG GAACTCGCCG CACAAACGGC CCGAATCGGA
GTGGCCACTG CGCAACTCTA TCCCCAATTC CACCTCTTGG GCACTATCGG TCTGGAAGCA
TTGCTTTCCG GGAGCGACTT TCTCACTTCC CAGAGCATGT TCTGGAATAT CGGCCCCGGC
GTTTCCTGGA ACATCTTCCG TGGCCGGGAA TTGCGACTGA ACATCGACCT GCAAACCGAA
CAGCAGCATC AGGCCCTGCT CGCCTACAAA GCAACCATCC TCCAGGCCCA GAGCGAAATC
GAGACCGCCT TGACCGCCTA TGCCAAAGAG CAAATCCGGC ACAACTCCCT GCAAAAAGCT
GTTCAAGCTG CCAAGCGCGC CGAAGCGGTG GCCAGGGACC AATATGCGGC AGGACTCGTC
GACTTTTACA ACGTCCTCGA CGCCCAGCGC TCGCTGCTCT CCCTGCAGGA CGAACTCCTC
CAGTCGCAGG GCGCGGTCGC TTCCAATCTG GCCCGGCTCT ACAAGGCCCT GGGCGGAGGC
TGGAAGCTTG CAGAAACGGC CGTAGCCGAC AAAACCTCCA CGCAACAAAG CTCCGAAAGG
GCGAAATAG
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| Protein sequence | MSIDFSSRRP FSGPLLMGLT IALSALLCGC AAVGPDYKGA SLEAPQGWNA EMEKGLQATR
PQDTTLSTWW KTFDDPVLNQ VAQKAVSGNL DLKSAVSRLR QARLKRGISS AGRYPTLSGN
GQFQRQHIRE NAGPPNGGDE VDYYNAQFDA GWELDIFGGI RRSVEAAQAE LEANRADVND
VLTSLLAEVA LNYIEVRTYQ HRLSITKANI ATQEKTYELN SSRYEAGLIN ELAVQQALRN
LERTRAQVAR LENGLQAAKN RLAVLLGQSP GSLSALLTPV RPMPEVPAQV AVGIPAEAMR
RRPDIQRAER ELAAQTARIG VATAQLYPQF HLLGTIGLEA LLSGSDFLTS QSMFWNIGPG
VSWNIFRGRE LRLNIDLQTE QQHQALLAYK ATILQAQSEI ETALTAYAKE QIRHNSLQKA
VQAAKRAEAV ARDQYAAGLV DFYNVLDAQR SLLSLQDELL QSQGAVASNL ARLYKALGGG
WKLAETAVAD KTSTQQSSER AK
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