| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2332 |
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| Symbol | |
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| ID | 8420192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2650669 |
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| End bp | 2653551 |
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| Gene Length | 2883 bp |
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| Protein Length | 960 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645038934 |
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| Product | diguanylate cyclase and metal dependent phosphohydrolase |
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| Protein accession | YP_003199193 |
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| Protein GI | 258406451 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCAC AAAAACTTTC CCGTATCGTC CACGGCTTTT TGGCCAAATG GATCCTTTTG
CCCGGAGCGA TCATGCTGCT CATCGGCACG GTTATCTGGT GCGGCATCGA AGCCCAGGGC
ATCCTTCACA ATCAGCAGGA CACAACCACG ACCCTGGGTC GTTTCGTTGC CAACTATCTG
CAGGATTGCG AAGAGGACTT GCGATACATC GCGTCGCGCC TTGAAAAAAA GGCGAACTTT
CCCGAACAAA TCCGCTCCCT GCTCAAGCAT AAGGACCATT TCCAAGCCCT GTATCTGCTC
GACAGCCAGA GCCGGGTCAA AGCCTCGGTC CCGAACGGCT CGCGCATCAG GGATTTTTCC
GGCCTCTTGA GTGATCTCCC GCCGCAACCG GCGAGCATGA CCACCGCCCC CTACTACTCC
GGTGATGCAA AGACCATCGT CACCAGTATG ATCGCGCCTG CCCGCGACAA CCACCTGGTC
CTCGCCGAAC TCAATCTCAA ATCTCTGCAG GAGGCGGTCC GGGCCTTCAC CAACCAGATT
CCCAACGGCC AGGCCATCAT TGCCGACGCC TACGGCAATC TCCTGGCCCA CCCGGAAATG
GCTCAGGTCA ACCGGCAGAC AAATTTGGGC CACCTGGACA TCCTGGCCGA CCTTCCCCAG
GGGCAGACAA GTTCCACGAT CTCCCTGGTC AACGACCGCT GGTCGCTGCT CAGCGCCACC
ACTGTGCCCG GGAAAAAATG GAAAATCTTG ATCAAGCAAA ACGCTTTCGC CCTATTCACT
CCGGCGCTGT GGCCAGTTTC CCTTTCCTTT GCCGCCCTGG CGACGATGCT GCTTTTGTTC
GCCCTGGCCG CCCAACGGCG GATGCACAAA CGGGTCATCA TCCCCTTGAA CGCTCTGAAC
CAGGAAATTG ATCGCCTGAC CCAGGGGGCG GAACCCGCCC AGGCTGGCTC CCCGGCCGAA
TCGGTTCTGG GCAACAGCTT CACCGAACTC TCCCGGTTGC ACGAGAATTT CCGAGACATG
CAGAACGCCA TCTGGGACCG GGAAATTTCG CTGTGGGAAA ACAAGGAACA CCTGCGCATT
ACCCTGCATT CCATCGGAGA CGGGGTCATC ACCACAGACA CTGAGGGGCT GCTGACGAGC
ATGAACCCGG TCGCTGAAAC ACTGACAGGG TGGACGGAGG CGCAGGCCAA AGGCCACCAC
ATTCAACAGG TCCTGCGCCT GACCCGGGAA AACCGGACAA CGCCGCACCT GGATCCAATC
CAGGAGGTTC TACAGACCGG TGAAATCCGC GACCTGCCCG AGCACGCCCA ACTCCATGCC
CTTGACGGCC ACGTCTATTC TATTGCCGAC ACGGCCGCGC CCATTCGCGA TACCGATGGC
CGCCTTGTCG GCGTGGTCAT GGTCTTTCGC GATGAAACAG AACACGTCCG CCAGGACGCC
CTGCTCAAGG AGAGCCGGGA ACGGTTGAAT CTGGCCCTGG AAGCGGGGAA CATCGGTCTC
TGGGACTGGC ACGTCCAGAC CGGCGCCGCG ATCATCAACG CCAATTGGGC GGAAATGCTC
GGCTACAGCG TCGAAGAACT CCAACCGGTC AGCATCCAGA CCTGGCGGGA TCTGTGCCAC
CCCGAAGACC TGAAGATGGC CGACGGGCTG CTCACCCAAT ACTTCAATGG CGAATTGCCC
ATGTATACCT GCGAACTGCG CATGCGACAC AAAAATGGCC ACTGGGCGTG GGTCATCGCC
AGAGGTAAGG TGACCGAATG GGGCGATTCC GGAGAGCCCG TCCGCATCAC TGGGACCCAT
GTGGACATCA CCGATCGTAA AATCGCCGAA GACGAATTAC GGTACATGAG TTTCCACGAC
GCCCTGACCG GGCTCTACAA CCGCAACTTC TTTGAGGAGG AGATGCACCG CCTGTCCACC
AGCCGCGCCT TCCCCCTGGG GATCATCATC TGCGACGTGG ATGGGCTGAA ACTGACCAAC
GACACGCTCG GGCACGAAGC CGGAGACCAA CTCCTGCGGA CGACAGCGAA AATCCTGACC
CGGACTTTCC GCCGCGAGGA TATCATTGCC CGGATCGGCG GTGACGAATT TGCGGTCCTT
TTGCCGAACA CCGACACCGT CACCCTGAAA TCCATTGTCA AACGGCTACG CCAGGTCGCC
GAGGAGGCCA ATGACCAGGA CCCGGCGCTC CAGATTTCCC TTTCCATCGG TTACGCCCTC
AATGACGGCA CCCAATCCAA CCTGCACACC ACCTTCGAAC ACGCCGACAA CGCCATGTAC
CGGGAAAAGA TGCAGCAGGA AAAAAGTTCT CGCAGCGCCA TCGTCCAGGC CCTGACTAAG
GCCCTGGAGG CCCGGGACCA TGTGACAGAT GGCCATTGCG ACCGCATCCA GGACTCGGTG
CTGAACCTGG CGGCCTGCCT CGATCTGTCC GAGAAGGACA AGAACGAACT CCTGCTTTTG
GCCCGCTTCC ACGATCTGGG CAAGGTCGGC ATCCGCGACG ACATCCTTTT CAAACCCGGG
CCGTTGACCG AAGAGGAATT TGCCGAAATG CGTGAACACA GTCGCATCGG CTACGATATC
GCCAGGGCGG TCCCGGATCT CAGTTCCACG GCAGACTGGA TCCTCAAACA CCACGAGTGG
TGGAACGGCA AGGGCTACCC TCTGGGGCTC AAAGGCGAGG ACATCCCGCT TCCCTCGCGG
ATCCTGTCCA TTGCCGACGC CTACGATGCC ATGACCAGCG ATCGACCCTA CCGCAAGGCC
ATGACCCACG AACAAGCTAT CGCCGAACTC AAGCGTAACG CTGGCACGCA GTTCGACCCC
GAACTCGTCC GCAAGTTCGT GACCATCGCC CCCTTCATCC CCGAGTCCAT TGCCGGAGCA
TGA
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| Protein sequence | MAAQKLSRIV HGFLAKWILL PGAIMLLIGT VIWCGIEAQG ILHNQQDTTT TLGRFVANYL
QDCEEDLRYI ASRLEKKANF PEQIRSLLKH KDHFQALYLL DSQSRVKASV PNGSRIRDFS
GLLSDLPPQP ASMTTAPYYS GDAKTIVTSM IAPARDNHLV LAELNLKSLQ EAVRAFTNQI
PNGQAIIADA YGNLLAHPEM AQVNRQTNLG HLDILADLPQ GQTSSTISLV NDRWSLLSAT
TVPGKKWKIL IKQNAFALFT PALWPVSLSF AALATMLLLF ALAAQRRMHK RVIIPLNALN
QEIDRLTQGA EPAQAGSPAE SVLGNSFTEL SRLHENFRDM QNAIWDREIS LWENKEHLRI
TLHSIGDGVI TTDTEGLLTS MNPVAETLTG WTEAQAKGHH IQQVLRLTRE NRTTPHLDPI
QEVLQTGEIR DLPEHAQLHA LDGHVYSIAD TAAPIRDTDG RLVGVVMVFR DETEHVRQDA
LLKESRERLN LALEAGNIGL WDWHVQTGAA IINANWAEML GYSVEELQPV SIQTWRDLCH
PEDLKMADGL LTQYFNGELP MYTCELRMRH KNGHWAWVIA RGKVTEWGDS GEPVRITGTH
VDITDRKIAE DELRYMSFHD ALTGLYNRNF FEEEMHRLST SRAFPLGIII CDVDGLKLTN
DTLGHEAGDQ LLRTTAKILT RTFRREDIIA RIGGDEFAVL LPNTDTVTLK SIVKRLRQVA
EEANDQDPAL QISLSIGYAL NDGTQSNLHT TFEHADNAMY REKMQQEKSS RSAIVQALTK
ALEARDHVTD GHCDRIQDSV LNLAACLDLS EKDKNELLLL ARFHDLGKVG IRDDILFKPG
PLTEEEFAEM REHSRIGYDI ARAVPDLSST ADWILKHHEW WNGKGYPLGL KGEDIPLPSR
ILSIADAYDA MTSDRPYRKA MTHEQAIAEL KRNAGTQFDP ELVRKFVTIA PFIPESIAGA
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