| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2288 |
|---|
| Symbol | |
|---|
| ID | 8420146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2599670 |
|---|
| End bp | 2601118 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645038889 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_003199150 |
|---|
| Protein GI | 258406408 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAATA AAAAACACCC GTTGTCCTAT GAAATACCCC TGATTGCGGT TTTGGTGCTC
GTGCAGATCG GGCTTGTCCT GTGGTATCTG CACCGCACAG GCCAGGTATT TCAATTTCAA
ACGGGTGTCA CGATCATTTC CTTGGACCAG TCCCGGGAGC CGGGCCGTTT GAGCCCCTAC
GGCCCGGGCT TCGAGCGGGA ACTGGTGGAC TCTTTCGCCC GCGAAAGCGA CCTCGCCGTT
CGCTGGAACG AGGCCGACAC CTGGCAGGAG GCCAGGGAAA AACTTCTCAA CGGTAGCGGC
GACCTCCTTA TCGCGCCCGG AGTGCCGCCT ATTTCCTGGC CAATCGACGG TCTGGCCGCC
GGCCCGGTCT ATCTGGACTC CCCCAGCCTG CTGGTCCACC ATACCCAGCG TTTCGGCCTG
CGATCCATCT ACGATCTGTG CCAGGTCCCT TTGAACGTCC CAGCCATTCC GGCCCTGAAT
TCGCTGGTCT TCGATGCCGA AGTGGAGATC CCCTGCCGTC CGGAGGTCGT CACCCGTGGG
GGCGGGGGGG TGCAGAGCCT CCTGGAGTTC ATGGAGGCAG AAGAGGCCCG CTTTGCTTTG
GTGGACAAAC ACCGTTTCCA GGCCTGGGCC CCGTTTTACC CGGAAGTGCG CCAGACCTAC
ACGTTTCCTG ACCAGGCCAG TCTCGGCTAT CGCTGGTATT GGGCGACTGA TCGGCCCGAA
GTCAGTCAGG CGCTGAACGC GTTCTGGGAA CGCCCGGAGC AGGCCACCGT TTTGGCCCAG
CTCCGGGAGC GCTATGCCGG CTTTTTCCCG GCGCAGCCGG ATTACTATGA ACTGCGCCAC
CTGTCCAAAG TCTTGCGCAA CCGGCTCCAG CGGTACCTGC CGACCATCCG CCAAGCCGCC
GAGGAAAATG GCCTCGATCC TTTATGGTTG GTGGCCATGA TCTACCAGGA ATCCCATTTC
GATCCCCAGG CCACAAGCCA TACAGGCGTC CGGGGGCTGA TGCAGATCAC CCGGAATACG
GCCCGAGAAC TCGGCATCGA CAACCGGCTG GATCCCGAAC AGAGCATTCT CGGCGGGGCA
CGGTATGTAA AATATCTCTG GGAGCGTTTC GAGGGCCAGG GACTGGAGGC ATGGGACCGG
TGGTTCATGG CCCTGGCTGC CTACAATCAG GGCTACAACC ACGCCCGCGA CGCTATGCGC
CTGACAGAAC AACTCGGCAA GGATCCCCAC TTTTGGGGGG ACATCAAGAG TGTCTTTCCG
CTTTTGAGTT ACAGCCGCTA CCACTCCCGA GTCGAAGCCG GATACGCCCG AGGCTTCGAG
GCTGTGGACT ACGTCCAAAG CATCCGTTTG TATTATTACA TCCTACACGG ATTCGTCTCC
CTTTCGCGTC CGGAAAGTGA GTACCTTGCC CCGTTGCTTG GGCTCGTCCC CCGGGGCTGG
CCCGGTTGA
|
|---|
| Protein sequence | MQNKKHPLSY EIPLIAVLVL VQIGLVLWYL HRTGQVFQFQ TGVTIISLDQ SREPGRLSPY
GPGFERELVD SFARESDLAV RWNEADTWQE AREKLLNGSG DLLIAPGVPP ISWPIDGLAA
GPVYLDSPSL LVHHTQRFGL RSIYDLCQVP LNVPAIPALN SLVFDAEVEI PCRPEVVTRG
GGGVQSLLEF MEAEEARFAL VDKHRFQAWA PFYPEVRQTY TFPDQASLGY RWYWATDRPE
VSQALNAFWE RPEQATVLAQ LRERYAGFFP AQPDYYELRH LSKVLRNRLQ RYLPTIRQAA
EENGLDPLWL VAMIYQESHF DPQATSHTGV RGLMQITRNT ARELGIDNRL DPEQSILGGA
RYVKYLWERF EGQGLEAWDR WFMALAAYNQ GYNHARDAMR LTEQLGKDPH FWGDIKSVFP
LLSYSRYHSR VEAGYARGFE AVDYVQSIRL YYYILHGFVS LSRPESEYLA PLLGLVPRGW
PG
|
|---|
| |