| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2246 |
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| Symbol | |
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| ID | 8420104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2550453 |
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| End bp | 2551211 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645038847 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_003199108 |
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| Protein GI | 258406366 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.353905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACGAT TCGTGCGGAT TGCGCCGCTC TTGATCTGCC TGATCGGTGG TGGCTTAGCT
GGTTGCGCCC ACCTCGCACC GACGACGCAC TCGCCTGTGC TCGAGGCCCA TCTGGAACTG
GCCGAGGCCT ACCTCAATAA TGACAAACCC CGGTTGAGCC TCAAGGAACT GCGCAAAATC
GGCGCCTCGG GTGACCATTC CAAGCGCTAC CACTTCGACC TCGGGCTGAC CTATATGGCC
CTCTCCCAAT GGCCCGCGGC TGCAAAGCAC CTCCGCCAGG CAGTGGCCAT CGATCCAGAA
TTCGCGCAGG CCTGGAACAA TCTCGGGCAG GTCTATGTGG CCCAAAGCCG CCCGGATAAG
GCGGAACAGG CGTTTCAGAC CGCCCTGGAC ACCTTGACCT ATCTCTCGCC GGAACGCGCC
GCCCTGAATC TGGCCCGCCT GTACCAACAG ACCGACCGCC CCCAAAAAGC GGCCGACCTG
GCGCTGCGGG CCATTGAGGA AAACGACCGT TTCGAACCGG CCTATCTGGT GCTCAATGAG
GTTCTGGTCT CTCAGGGCCA GATCGAAGAA GCCCTGACGC GCCTGGAGAC AGCTCAAGCC
AAGCTCCCCA AGAGGCCGGC CATGCTCCTC GCCCTGGCCG AAAACCACCT CCGGGTTGGA
AACACCGCCT ATGCCCGCAC CTGGTTCCAG CGCATCATTG CCGCAGCCCC CCAAAGCGAA
GAGGCCGAAG TGGCCCGGGA TTACCTGGCA CTCTTCTGA
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| Protein sequence | MLRFVRIAPL LICLIGGGLA GCAHLAPTTH SPVLEAHLEL AEAYLNNDKP RLSLKELRKI
GASGDHSKRY HFDLGLTYMA LSQWPAAAKH LRQAVAIDPE FAQAWNNLGQ VYVAQSRPDK
AEQAFQTALD TLTYLSPERA ALNLARLYQQ TDRPQKAADL ALRAIEENDR FEPAYLVLNE
VLVSQGQIEE ALTRLETAQA KLPKRPAMLL ALAENHLRVG NTAYARTWFQ RIIAAAPQSE
EAEVARDYLA LF
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