| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2234 |
|---|
| Symbol | |
|---|
| ID | 8420091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2537231 |
|---|
| End bp | 2538745 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645038834 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_003199096 |
|---|
| Protein GI | 258406354 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTAAGC AGAAGAAAGA CAAAGCAGGG ACTGAAAGTC AGGTCATCAA AAACCGCTGG
GACAAAGCGC AGAATTTCGC CGAACAGGGT CTGGCGCTGT TCGGGAACAC GTTTCGCAAG
GATACGGATA TTCAGGACCT GATCCAGTCC TATGAGTCCC TGAGCGCTGA AGATCTTGAA
AACGTGGAGC ACACGTTTGC CTTGGCCGGT CGGATCATGG CCATTCGCTC GTTTGGCAAG
GCCACTTTCA TGCATATCCA GGACAGCACC GGCAAACTCC AGGTCTTTGT CCAGCGTGAT
GCGGTCGGAG CTGATCTGTA CAAGCTCTTT AAAAAGTTCG ATGTCGGTGA CATCGTCGGT
GTCCGGGGGA CGCTTTTTCG GACCCGAACC GACGAATTGA CGCTCAAGGC GGAGCATGTC
GAACTGGTCA CCAAATCCAT GCGGCCGCTT CCGGAAAAAT ACCACGGCCT CAAGGATGTC
GAGACCAGGT ATCGCCAGCG ATACGTCGAT CTGATCGTTA CCCCCCAAGC TCGGGATATT
TTTGTCAAAC GGACCCGTAT CGTCCAAGGG TTACGCCATT TTCTGGACAA TCGTGGCTTC
ATGGAGGTTG AGACCCCCAT GATGCAGCAC ATTCCGGGCG GGGCGACGGC CCGGCCGTTT
GTGACCCACC ACAACGCGCT GGATATGGAG CTTTACCTGC GCATCGCGCC GGAGCTGTAT
CTGAAGCGAC TGTTGGTCGG CGGGTTGGAG CGGGTGTATG AAATCAACCG CAATTTCCGG
AATGAAGGCA TCTCCACACA GCACAATCCA GAATTCACCA TGCTCGAATT CTATTGGGCC
TACGCCGATG TCTACGATCT CATGGATCTG ACCGAGGAGA TGTTTGCCCA ATTGGCCCAG
GACGTCTGCG GGACGACCCG GATTACCTAT CAGGGGCAGG AGATCGAGCT TGGCGGCCGC
TGGAACAGGT TGACCTTCCA CCAGGCCCTG GAGGAGATCG GGGGACTTGA GCCGCAGCAG
TATCAGGACC ATGATCAGGC CCAGGCCCTG GTCCAGCGGC TGGGCGAGAA TGTCCAGACC
GGAGAGCAAC TCGGCAAGAC CCAAGCCAAA TTGTTCGATC TGCTGGTGGA GCCCAAACTC
ATCCAGCCCC ACTTTATTTC GCACTACCCG ACCGACATTT CCCCCTTGTC CCGGCGCAAT
GAGGAGAACC CTGAACTCAC AGACCGCTTT GAACTGTTTA TTTGCGGCCG TGAAATGGCC
AACGCGTTTT CCGAACTCAA CGACCCCTTT GACCAGCGGC AGCGCTTCGA ACAGCAGGTG
CAGGAAAAAA GCGCCGGCGA TGATGAGGCC CACGCCATGG ATGAAGACTA TCTCCGCGCT
TTGGAGTACG GCATGCCGCC AGCGGCCGGC CAAGGGGTGG GCATCGACCG TCTGGTCATG
CTTTTGACGG ACTCGGCTTC GATTCGTGAA GTTATCCTCT TTCCGTTGCT GCGGCCGGAA
ACCAAGACAG AATAA
|
|---|
| Protein sequence | MSKQKKDKAG TESQVIKNRW DKAQNFAEQG LALFGNTFRK DTDIQDLIQS YESLSAEDLE
NVEHTFALAG RIMAIRSFGK ATFMHIQDST GKLQVFVQRD AVGADLYKLF KKFDVGDIVG
VRGTLFRTRT DELTLKAEHV ELVTKSMRPL PEKYHGLKDV ETRYRQRYVD LIVTPQARDI
FVKRTRIVQG LRHFLDNRGF MEVETPMMQH IPGGATARPF VTHHNALDME LYLRIAPELY
LKRLLVGGLE RVYEINRNFR NEGISTQHNP EFTMLEFYWA YADVYDLMDL TEEMFAQLAQ
DVCGTTRITY QGQEIELGGR WNRLTFHQAL EEIGGLEPQQ YQDHDQAQAL VQRLGENVQT
GEQLGKTQAK LFDLLVEPKL IQPHFISHYP TDISPLSRRN EENPELTDRF ELFICGREMA
NAFSELNDPF DQRQRFEQQV QEKSAGDDEA HAMDEDYLRA LEYGMPPAAG QGVGIDRLVM
LLTDSASIRE VILFPLLRPE TKTE
|
|---|
| |