| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2232 |
|---|
| Symbol | |
|---|
| ID | 8420089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2535320 |
|---|
| End bp | 2536009 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038832 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003199094 |
|---|
| Protein GI | 258406352 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTC CGGTCTATGA ACTCCGCCAG GTGCGCAAGG TGTATTCCGG CCCGGCTGAA
CAATTGACCG TGCTCGATGG CGTCGATTTT GCGATCGCCC GCGGCGATTC CCTGGCGGTC
CTCGGGGCCT CCGGGTCAGG CAAAAGCACC TTTTTGCATC TGCTCGGGAC CTTGGATACG
CCGAGTTCCG GTTCGCTTCT GTTCGATGGC AAAGATCTGG CGCAGTTTTC AGACCGGGAA
AAGGCGGTCC TGCGCAACTC CCAGCTCGGT TTTGTTTTTC AGTTCCACCA TCTCCTGCCC
GAATTCACGA CCCTGGAGAA TGTGGCCATG CCCGGACGGA TTGCGGGCAA ATCTCGAGCT
GAAGCCGAAG ATCTGGCTGC AGCGGCTCTG GACCAGGTCG GTCTGGGCCA TAAAGGGCGA
CAGCAGGTCA ACACCCTCTC CGGAGGAGAA CGGCAACGGG CGGCCATTGC CCGGGCCGTG
GTCTTGAGCC CCTCGGTCCT GCTGGCCGAC GAACCCACAG GAAACCTGGA TGAACGCACC
GGCGACCGGG TCGGCGACCT TTTGTTTCGT TTAAATGACG AATTGGGGAC AACCATGGTT
GTGGTGACCC ACAATCTCCG GTTGGCCTCC CTGTTTTCCC GGCAATATCT GTTACATGAC
GGGCGCCTGC AGCCAGCGGC GTCCGAGTGA
|
|---|
| Protein sequence | MNSPVYELRQ VRKVYSGPAE QLTVLDGVDF AIARGDSLAV LGASGSGKST FLHLLGTLDT
PSSGSLLFDG KDLAQFSDRE KAVLRNSQLG FVFQFHHLLP EFTTLENVAM PGRIAGKSRA
EAEDLAAAAL DQVGLGHKGR QQVNTLSGGE RQRAAIARAV VLSPSVLLAD EPTGNLDERT
GDRVGDLLFR LNDELGTTMV VVTHNLRLAS LFSRQYLLHD GRLQPAASE
|
|---|
| |