Gene Dret_2183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2183 
Symbol 
ID8420039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2486011 
End bp2486781 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content65% 
IMG OID645038782 
Productcompetence protein F 
Protein accessionYP_003199045 
Protein GI258406303 
COG category[R] General function prediction only 
COG ID[COG1040] Predicted amidophosphoribosyltransferases 
TIGRFAM ID[TIGR00201] comF family protein 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0808644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGCGCG GCAGATGGCT CCGTTCGCGG GGCGTCGCTG ATGCGGTAAA GACCTGGTCC 
AGGCGCTTGG CCGGACGGTT GGCGCCGGGC CGGTGCCTGT ATTGTGGGGC CGTGCTCGAT
GCCCCCGGGG CTGGCGAGTC GCTGTGCCAC CGGTGCGCCC CCTTTTTTGC GCCACGCCCC
GGGGGATTTT GTCCAGGATG CGGTCAGCTG CTTGAAGACG AAGCCGCCCC CCTGCATTTG
TGCCGTTCGT GCCGTGACGC CCCCCAGCCA TGGGAGCAAT TGGCCTTTTT TGGGGTCTAT
CAGGGTCCCC TGCGTGAGGT GATTCTGGAA TATAAGCTCC AGGGGCGGCT GGGGCATACA
GCGCTTTTGG CCGCGTGTCT GTCCCGTTGC TACCGGCTCC ATTTCGCCGG CGGCGGCTGG
GACACGCTGG TTCCGGTGCC GTTGCACAGG ACCAGGCTGC GCCGGCGCGG GTTCAACCAG
AGCTGTGAAC CATTGAAAGG CTGGGGTGCG CAGGAGGGTC TCGAGCTTGT CGTACGGGGG
CTGGAGCGGG TCCGGCCGAC TCCGTCCCAG ACGGGACTGC ACAAAACCGA GCGGGAGCAC
AACATGCGTG ATGCCTTTGC TGTCTTCGGA GAGATCAGTT GGCATGAGCG CAATGTCCTT
CTGGTGGACG ATGTTTTTAC GACCGGGGCC ACTTTGAGCG CCTGCGCCCG GAGGCTTTGT
GAGGCCGGGG TGGCCCGCTT GGGAGTATTG ACCATGGCGC GCGCGGAGTA G
 
Protein sequence
MWRGRWLRSR GVADAVKTWS RRLAGRLAPG RCLYCGAVLD APGAGESLCH RCAPFFAPRP 
GGFCPGCGQL LEDEAAPLHL CRSCRDAPQP WEQLAFFGVY QGPLREVILE YKLQGRLGHT
ALLAACLSRC YRLHFAGGGW DTLVPVPLHR TRLRRRGFNQ SCEPLKGWGA QEGLELVVRG
LERVRPTPSQ TGLHKTEREH NMRDAFAVFG EISWHERNVL LVDDVFTTGA TLSACARRLC
EAGVARLGVL TMARAE