| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2173 |
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| Symbol | |
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| ID | 8420024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2470312 |
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| End bp | 2471757 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645038767 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_003199035 |
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| Protein GI | 258406293 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.843006 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCATTT TACAACGTTT TGCCGCCCGC TCCCACAAAG GCGCTACCCG AATGATCTGG
CAATTGGCAT GGCCCCAATT GCTGATGATG TTTTTCCATT TCTGGCTCGG GTTCACCGAC
GTCTTTGTCG CCGGACGGTT GAGCGACCAG GTCCAGGCCT CCCTGGGCAT TATCACCCAA
AGTCTGTTTT TCTTTCTCGT TGTGGCCATG GCGCTTGCCA ACGGGGCTGT CGCCTCCATC
AGCCAATCGC TTGGGGCCGG GCGAGACAAA CGGGCAGCGC GCTACGCCAT GCTGGGGATC
GCCCTGGTCG TCCTGGCCAG CAGTCTCCTG GTGCTGGTGG CCATCCCGCT GAACGGACCG
CTGCTGACCC TGCTGCGTGT CCCGGAAGCT ATCCGCCCCA TCACCGACTA TTTCCTCAAA
GTCTACCTGC TCCTGTTGCC CCCGTATTAT CTCTTTATCA TGGGCAACGC CATTTTTCGG
GCCCAAAAAC AGGTCCATTT ACCGCTCCTG GCCATGATCC TGGTCACCAC CGTCAATATT
CTCGGTGACT TCGGTTTGGG ATTTGGTCTG TGGGGGTTGC CGCGCATGGG CTATAAAGGC
CTGGCCTGGG CCACCTTTTT CTCCGTCAGT GCCGGGGCCC TGTTCGACCT GTTCATCCTG
GCCCGCCGCG GCTGGCTCCG GCCCAGCCAC TTCCCGCCGC TACGCTGGAT CCGTCGCGGT
TTGCCCTATC TCTTTCAGGT CGCGTGGCCG GCTGGCATGC TCCAGATCCT GTGGCACAGC
GGCTACCTGG TCATCTATGC CCTGACAGCC AGCTTGCCCC ACGGGAATAT CACTGCCTTG
GCCGCCCTCA CGGCAGGATT GCGACTGGAA TCGATCCTCT TCCTGCCCGC TTTTGCTTTC
AATATGACCG CCTCGATTCT TGTCGGGCAC TACCTGGGTG CCGGCGATGT GGACGGAGCT
CGCGGCATCG GCTGGCGTAC CTGGGGTCTT GGTTGCGGGG CCATCACCCT GCTCACCGCC
TGTCTGTGGA TGGCCATCGA TCCCTTGTCC GCGGTCCTGG CGCCCCAAGC CGCAGTTCAA
GCCGAAACAG CACGCTATCT GCAGTTCAAT TTTCTGGCCA TCCCCTTCAC GGTGACCAGC
ATGATTTTCG GCGGTGTCTT TAACGGCGCC GGAGCCACGC GCTACAACAT GAAGACCATC
GGTGGCACGG TCTGGCTGGT GCGCATCCCC TGCGCCTATA TTCTAGGCCA TCTCCTGCTG
GGCACGGCAA CCGGGATCTG GGCGGCGATG CTCATTTCCC AGAGCCTGCA GGCCATCATC
ATGCTCTACC TGTTCAAAAA CAAAGATTGG TTCCGCTTCA GTATGCACGC TCACAAACTG
CAACCGAGCA CAGGAGTTCG GCATGCCGCT CACTTTCCGG CCACTCTCCC TTCAAAATCT
AAATAA
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| Protein sequence | MAILQRFAAR SHKGATRMIW QLAWPQLLMM FFHFWLGFTD VFVAGRLSDQ VQASLGIITQ
SLFFFLVVAM ALANGAVASI SQSLGAGRDK RAARYAMLGI ALVVLASSLL VLVAIPLNGP
LLTLLRVPEA IRPITDYFLK VYLLLLPPYY LFIMGNAIFR AQKQVHLPLL AMILVTTVNI
LGDFGLGFGL WGLPRMGYKG LAWATFFSVS AGALFDLFIL ARRGWLRPSH FPPLRWIRRG
LPYLFQVAWP AGMLQILWHS GYLVIYALTA SLPHGNITAL AALTAGLRLE SILFLPAFAF
NMTASILVGH YLGAGDVDGA RGIGWRTWGL GCGAITLLTA CLWMAIDPLS AVLAPQAAVQ
AETARYLQFN FLAIPFTVTS MIFGGVFNGA GATRYNMKTI GGTVWLVRIP CAYILGHLLL
GTATGIWAAM LISQSLQAII MLYLFKNKDW FRFSMHAHKL QPSTGVRHAA HFPATLPSKS
K
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