| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2154 |
|---|
| Symbol | |
|---|
| ID | 8420005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2450348 |
|---|
| End bp | 2451049 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645038748 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_003199016 |
|---|
| Protein GI | 258406274 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0684055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACTATC AATTCGACTG GAAACTTGTC GTCTCCGGAG AATACGGAGA ATGGATCATC
CAGGGGCTGA TCACGACCCT TCAGATCTCC GCGGTGTCCA TTGTCCTCTC CCTTGTGGTC
GGAACGATCA TCGCCGTGTT CCGCCTTTCC AAGGTCAAGC CCCTGGAATG GTTCAGCTTG
GCGTACACAG AATTTTTCCG CAATACACCG CTGCTCATCC AGATCTTTTT CTGGTACTTC
GGCTCGAATT CCGTTTTGCC CCAATTCGTC AACGAGTGGC TGTACGAACA GAACTTTGAA
TTCGCCGCCG GCGTGATTGC CTTGACCGTG TACACCTCTG CGTTCATTGC CGAAGAAATT
CGCTCCGGTA TCTTTTCCAT TCCCAAAACG CAGTTGGAAT CCGCCCGGGC CAGCGGACTG
ACCTTTATCC AGTCTATGCG CTTTATCATT TTGCCCCAGG CGTACCGGAT CATTATTCCC
CCGCTGATTT CCCAATTTTT GAATCTGACC AAGAACTCCT CTCTGGTCAT GACCATCGGC
GTTATGGACC TGACCTACAT GGCCCGGCAA ATTGAATCAT ACACATTTCA CGGCTTTGAA
GCCTTTACCG TGGCCACGGT GCTCTACATC TGTATTTCAC TTGTCATTTC CTTTGTCGTC
ACCATGTACA ACAAGCACTT CCTGCGCACG ATCCAATACT AA
|
|---|
| Protein sequence | MNYQFDWKLV VSGEYGEWII QGLITTLQIS AVSIVLSLVV GTIIAVFRLS KVKPLEWFSL
AYTEFFRNTP LLIQIFFWYF GSNSVLPQFV NEWLYEQNFE FAAGVIALTV YTSAFIAEEI
RSGIFSIPKT QLESARASGL TFIQSMRFII LPQAYRIIIP PLISQFLNLT KNSSLVMTIG
VMDLTYMARQ IESYTFHGFE AFTVATVLYI CISLVISFVV TMYNKHFLRT IQY
|
|---|
| |