Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_2116 |
Symbol | |
ID | 8419966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2406624 |
End bp | 2407157 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645038709 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_003198978 |
Protein GI | 258406236 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000187426 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.445804 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAAA ATAAATATCA CAAGTCCGGC ATGTCCCGCC GGGATGTCCT CATGGCACCC TGGCAGCGCT TCCGGCGGCA GGATTCCCGT GACAGCAAAA CGGGCTGGGA TGCGTCTGCA CGTGAAGCGG ACGGTTTGTT GCGCGAAGGC CATTTTCAGC AGGCCCTGGC GGCTTATCGG AAATGTGTCG CTCAGGACCC CGGCCACCGC GAGGCCCAGA AAAAGATGGT CGTGTGTTAT CTGTGGCTGG AGCGCTATCG CCAGGCACGC AAGGTTCTCG ATCGCCTCCG GCAGGACCAG GAAGATGATT TCGTGCATCT CTATTCCGGT GTTGTCGCCG CTTTTGAGGG CGATCTGACC GCAGCGTTTG CGGAATGGGA CAGATACGCC AATTATGACC AGCCTCTGGT GCTCCGGGCG ATCAATCTGC AGTTGGCTTT GTATGAGTCC GGGGAATCCC CGGACCCTGA GGAAGCTGGC CGGGCCGTCT TCGAGGCCAT TGAAGAACAG CGGCGGCGCG ATCGTGGCCA GTAA
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Protein sequence | MSQNKYHKSG MSRRDVLMAP WQRFRRQDSR DSKTGWDASA READGLLREG HFQQALAAYR KCVAQDPGHR EAQKKMVVCY LWLERYRQAR KVLDRLRQDQ EDDFVHLYSG VVAAFEGDLT AAFAEWDRYA NYDQPLVLRA INLQLALYES GESPDPEEAG RAVFEAIEEQ RRRDRGQ
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