Gene Dret_2116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_2116 
Symbol 
ID8419966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2406624 
End bp2407157 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content59% 
IMG OID645038709 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_003198978 
Protein GI258406236 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000187426 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.445804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAA ATAAATATCA CAAGTCCGGC ATGTCCCGCC GGGATGTCCT CATGGCACCC 
TGGCAGCGCT TCCGGCGGCA GGATTCCCGT GACAGCAAAA CGGGCTGGGA TGCGTCTGCA
CGTGAAGCGG ACGGTTTGTT GCGCGAAGGC CATTTTCAGC AGGCCCTGGC GGCTTATCGG
AAATGTGTCG CTCAGGACCC CGGCCACCGC GAGGCCCAGA AAAAGATGGT CGTGTGTTAT
CTGTGGCTGG AGCGCTATCG CCAGGCACGC AAGGTTCTCG ATCGCCTCCG GCAGGACCAG
GAAGATGATT TCGTGCATCT CTATTCCGGT GTTGTCGCCG CTTTTGAGGG CGATCTGACC
GCAGCGTTTG CGGAATGGGA CAGATACGCC AATTATGACC AGCCTCTGGT GCTCCGGGCG
ATCAATCTGC AGTTGGCTTT GTATGAGTCC GGGGAATCCC CGGACCCTGA GGAAGCTGGC
CGGGCCGTCT TCGAGGCCAT TGAAGAACAG CGGCGGCGCG ATCGTGGCCA GTAA
 
Protein sequence
MSQNKYHKSG MSRRDVLMAP WQRFRRQDSR DSKTGWDASA READGLLREG HFQQALAAYR 
KCVAQDPGHR EAQKKMVVCY LWLERYRQAR KVLDRLRQDQ EDDFVHLYSG VVAAFEGDLT
AAFAEWDRYA NYDQPLVLRA INLQLALYES GESPDPEEAG RAVFEAIEEQ RRRDRGQ