| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2103 |
|---|
| Symbol | |
|---|
| ID | 8419953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2393564 |
|---|
| End bp | 2394223 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 645038696 |
|---|
| Product | thiamine-phosphate pyrophosphorylase |
|---|
| Protein accession | YP_003198965 |
|---|
| Protein GI | 258406223 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.191843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGG ATTTGAGCCT GTATTTGGTG ACCGACCGGG GAAGCTGCCA GGGACGGGAC
TTGATCGAGG TCGTCCTCCA GGCAGTGGCC GGTGGGGTCA GTGTGGTCCA GCTTCGGGAA
AAACAGACCG AGACCAGGGA GTTTGTCGAA CTGGCTCGGG CTCTACACGA TTGCCTCCAG
CACCGCGGCG TGCCGCTTTT CATCAACGAC CGGGTCGATG TGGCCCTGGC TGTCGGGGCT
GAAGGCGTTC ATGTCGGTCA GGAGGACATG GATCCCCGGG ACGTGCGTCG ACTGGTCGGC
TCCGGGATGT ATGTCGGTCT TTCGGCGCAG ACCGAAGCCC ATATGCACAT GGCCAAGCAG
TTTCCTGTGG ACTATATCGG TTTGGGGCCG ATCGCCTCGA CGCCAACCAA AGAAGATGCC
GGTGCCCCAT TGGGTATTGC TGGATTCGCT CGGCTACGTG CTCTCGTCTC CCTGCCGGTG
GTGGCGATCG GAGCCGTGAA CGCGGCCAAT ACCTCGGCGA TTATCCACCA GGGAAACGCT
GATGGTGTAG CGGTGGTTTC GGCCCTGTGC GCTGCAGCAG ACCCGCGCGA AGCCGCGCGC
GGACTCTATC GTCAGATTGT CGATGCCCGC TCCCAGAAAG ACGGGTCTGG AGAAAAGTGA
|
|---|
| Protein sequence | MSLDLSLYLV TDRGSCQGRD LIEVVLQAVA GGVSVVQLRE KQTETREFVE LARALHDCLQ
HRGVPLFIND RVDVALAVGA EGVHVGQEDM DPRDVRRLVG SGMYVGLSAQ TEAHMHMAKQ
FPVDYIGLGP IASTPTKEDA GAPLGIAGFA RLRALVSLPV VAIGAVNAAN TSAIIHQGNA
DGVAVVSALC AAADPREAAR GLYRQIVDAR SQKDGSGEK
|
|---|
| |