| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2099 |
|---|
| Symbol | |
|---|
| ID | 8419949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2388072 |
|---|
| End bp | 2389169 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645038692 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003198961 |
|---|
| Protein GI | 258406219 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0897069 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAGAA TCGTCCTCGA AAACGTTTCC CACACCTACG ATACGAGCGA CCGGCCGGAT
TCGGACAAGA CCTTTGCCGT TCAGGGGTTG GACATCTGTT GGGACAATGG GACCGCAAAT
GCGTTGCTCG GCCCTTCGGG GTGCGGCAAG ACGACGCTTT TGAATATCAT TTCCGGCCTG
TTGACCCCGT CGCAGGGCCG GGTCCTGATC GACGGCCGGG ATGTGACCAC CCAACAGCCC
CGGGAGCGCA AGATCGCCCA GGTATTTCAG TTTCCGGTCG TGTATGACGC CATGAGCGTC
TACGACAACC TCGCCTTTCC CCTGCGCAAC GCCAAATATC CCCGGCAGGA GATTGATGCC
AAAGTCCGGG AGGTGGCCGA GATCCTGGAC CTGACAGATC TGCTCAAGGC CGCAGCTGCC
AAGCTCAATC CCGCGGATAA ACAAAAAATT TCCCTGGGGC GCGGAATCGT GCGCGAGGAC
ACGGCCGCGA TATTGCTCGA CGAGCCGCTG ACGGTCATCG ACCCGAAACT CAAATGGTAT
TTGCGGCGCA AGCTCAAAGA GGTTCAGGAA GAACTCGGCA GGACGATGAT TTATGTCACC
CATGACCAGC ATGAGGCGCT GACGTTTGCC GATCAGGTGA CCGTCATCCG GGACGGGGTT
CTGGTTCAAA ACGGCACGCC CCAGGAACTT CACGATGAAC CGCAGGATCC CTTCATCGGC
TATTTTATCG GCAGTCCGGG GATGAATTTC TTTGAATGCC ACCTGGAAGG GGAGCGCTTT
GTCTGCCGCG ACCAGCTGAC ATTTCCGGTG CCCCAAGCAT GGCGGGATGT TGTGCGCGAT
CATCAGGGCG AGCAATTTGG TCTTGGTATC CGCCCCGAGT TCGTTCACGT CCATCAGGAT
GCGCAGCAAG GCGCCCCGTG CCAGGTTCAA GTCATCGAGG ATACGGGGGC GTACCGGATT
TTCACGCTCT GGCAGGGAGA TATCCGGATC AAGGCTCGTG TCTCAGAGGC GGTGCGCCGT
CAGGAGGGCG ATGAGGTTGG TGTCACGTTC AGAGAGGATA AAATGAAACT TTTCCAAGGC
GCGAAACGCA TAATATGA
|
|---|
| Protein sequence | MARIVLENVS HTYDTSDRPD SDKTFAVQGL DICWDNGTAN ALLGPSGCGK TTLLNIISGL
LTPSQGRVLI DGRDVTTQQP RERKIAQVFQ FPVVYDAMSV YDNLAFPLRN AKYPRQEIDA
KVREVAEILD LTDLLKAAAA KLNPADKQKI SLGRGIVRED TAAILLDEPL TVIDPKLKWY
LRRKLKEVQE ELGRTMIYVT HDQHEALTFA DQVTVIRDGV LVQNGTPQEL HDEPQDPFIG
YFIGSPGMNF FECHLEGERF VCRDQLTFPV PQAWRDVVRD HQGEQFGLGI RPEFVHVHQD
AQQGAPCQVQ VIEDTGAYRI FTLWQGDIRI KARVSEAVRR QEGDEVGVTF REDKMKLFQG
AKRII
|
|---|
| |