| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1996 |
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| Symbol | |
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| ID | 8419841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2293439 |
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| End bp | 2295142 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 645038584 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003198858 |
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| Protein GI | 258406116 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGACAAA AGATCAGGCT TGGGGAAATG CTCGTAGAGC AAGGCATGCT TACCAAAGAA
CAGCTTGACA GCGCTTTGGC TGAGCACAAA AAACAAGGCC TTAAGCTAGG TCAGTATCTT
GTTCGGTTCA ATATCATCCG GGAAGACAAG GTTGTTGAAC TTTTAAGCCA ACAAATGCGA
ATCCCCAGGT ACACTCCCTC CAAGTATCCC TTGGATATGC ATTTGGCCCA GATTGTCCCC
TCGGAGATAG CCCAAAAATA TCAGGCAATA CCTTTGATTC GCAGGGGGAA TGTGCTTGGT
GTTGCGACTT CTGATCCCTT GGATATAGAA GCTTTGGACG GCCTCGAAGT ACACACCAAC
ATGGAGATTG AGCCTGTCGT CTGCACCGAA AACGAATTTG AACAAATATA TACGACTCTG
TACGGCATAG ACAGCGGCAT GGAAGAGGTC ATGGAAGATG TGGAGCACAT GGACCTCACC
CATGAAAGCC AAGACACAGA GCAAGCGACG GATGTTGATG TAAGTTCCCT CGAAGACCAG
GCGGATCAGG CTCCAGTTGT CAGGCTGGTT AACTCCATAC TGGCGCAGGC AATCAAAGAG
AGGGCCAGCG ATATCCATCT CAGCCCTGAA AAAGAGAAGG TCCAAACCAG ATTCCGCATA
GATGGCAAAC TGCGGGAAAT GTCCACCCCT CCCAAGAATC TTTTTCCTGC CCTTGTTTCC
CGGATTAAAA TTTTGGCGAA CATGGATATC TCCGTGACCA GAATTCCTCA GGATGGACGA
TTTACAATCA TTTTGCAAAA AAAAGAAATC AATGTCCGAG CCTCTTGCAT CCCCACCATT
TATGGGGAGA ATGTCGTCCT CAGGCTTTTG GATATGAGCG CCAAGGCCTT TACCTTGGAT
GACCTGGGTA TGCAGGAGGA CGATCTGGCC AAAATGGAAG CTGCTATTCA CAAGCCTTAC
GGCTTGATCT TGTCCACAGG CCCCACAGGC AGCGGCAAGA GTACCAGCCT CTACGCCAGC
CTGCGCCGGA TAAACCACCC GGATATCAAT ATCGTTACCT TGGAGGATCC GGTGGAGTAC
CGGGTGGAGG GTGTCCGACA GGTGCAACTC AATCGCCGGG CCGGGATGAC TTTTCCCTCG
GGGCTGCGCT CCATCCTGCG CCAGGACCCG GACGTCATCA TGGTGGGCGA GATCCGGGAC
TCTGAGACCG CCCATACTGC GGTGCAGTCC GCCATGACCG GGCACAGGGT GTTCTCGACG
GTTCACACCA ATGACGCAGC CGGGGCTATT ACCAGGCTCA TAGATATGGG CATAGAGCCC
TTTCTTGTTT CATCAGTGCT CTTGGTCTCC TTCGCTCAGC GCCTGATGCG TCGGGTCTGC
CCCAATTGCG CTGAGAAATA TCAGCCGACT GGCGAGGGCC TGCGCGCCTT GGGCCTGGAG
CAATCCTCCG GTTGCACTTT TCTCCAGGGC CGCGGATGCA ACATGTGCAT GAATTCCGGG
TACAGGGGAC GAATAGCAGT CTTTGAGATA CTCAACATAG ATGAAGAAAT CCAGGACATG
ATTAACCGAC GCGCCACCAC CCGGGAAATT ACTGCCGCCG CAGTCCAGTC GGGCAAGCTC
AAAACATTGA GACATGATGC CGCCAGCAAG GTCTGCCAAG GTTTGACCAC AGTTGAGGAA
GCCGTATCCG TGGTGATGAC CTAA
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| Protein sequence | MRQKIRLGEM LVEQGMLTKE QLDSALAEHK KQGLKLGQYL VRFNIIREDK VVELLSQQMR
IPRYTPSKYP LDMHLAQIVP SEIAQKYQAI PLIRRGNVLG VATSDPLDIE ALDGLEVHTN
MEIEPVVCTE NEFEQIYTTL YGIDSGMEEV MEDVEHMDLT HESQDTEQAT DVDVSSLEDQ
ADQAPVVRLV NSILAQAIKE RASDIHLSPE KEKVQTRFRI DGKLREMSTP PKNLFPALVS
RIKILANMDI SVTRIPQDGR FTIILQKKEI NVRASCIPTI YGENVVLRLL DMSAKAFTLD
DLGMQEDDLA KMEAAIHKPY GLILSTGPTG SGKSTSLYAS LRRINHPDIN IVTLEDPVEY
RVEGVRQVQL NRRAGMTFPS GLRSILRQDP DVIMVGEIRD SETAHTAVQS AMTGHRVFST
VHTNDAAGAI TRLIDMGIEP FLVSSVLLVS FAQRLMRRVC PNCAEKYQPT GEGLRALGLE
QSSGCTFLQG RGCNMCMNSG YRGRIAVFEI LNIDEEIQDM INRRATTREI TAAAVQSGKL
KTLRHDAASK VCQGLTTVEE AVSVVMT
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