| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1991 |
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| Symbol | |
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| ID | 8419836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2287245 |
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| End bp | 2289110 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645038579 |
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| Product | Tfp pilus assembly protein ATPase PilM-like protein |
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| Protein accession | YP_003198853 |
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| Protein GI | 258406111 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAATG AAAAAGATGT ATCTTCAACG GAAAAACTTC TACACGTTAT CCGCAACAAG
CCTGAAGACG AAACTGTTGC TGTGTTCGAA TCACAAGCTG TCCACAATAA GCAAAAAAGA
ACATCGAAGA AGTCAAAAAG AAATCACTTC GTGCCTTTCA AGCCTAAAGA AACAATCGGT
GTTGAGATTC AAGACACGCA CTTAAATGTA GTTAGAATGG CGCAATCAGG CCATGGCTGG
GAGGCGATCC AGGCCCTCAC TATCCCTATG CGGGAAGAAA TGGCTTTAGA TAGCCCCGAA
TTCAGGTCCT TTCTCAAAAG CCAACTACAA AGCATAGAAG GAATAAAAAA AGCTCATGTT
TGGGCCATGC TTTCGGCTTC CCAAGGAGAA ATCTGGCATA CAAAAATTCC CCTTATGAAG
AAAGGTCTGG CTAACGCTGT CTTTTGGGCT GCGAAGAGAG ACAATGATTT CGAAGAAGAC
AAGGTGGTCT TTGACTATCG AATTCAAAAC CAGATTGCCG ACAAAGACGT CAAAAAATAT
TGGGCGATGG TTTCTACCTT CCCCAAGAAT ACAGTCAAAA ACCTGAAGGA CGTATTCTCT
AAGTCCGGAG TAGACTTAGA GGGCATCACC CTTCCGGCTT TCAGCCTGCA AAACTTGTTC
ACTCACAATT GGGTTGACTC CAAAGAAAAA CCCTTCGCTG TATTACATAT CTACCAGCAT
AACTCCTCGA TCAACATTTA CGACAGCGAC AACAAACTGC TTCTGAGTCG TACGACCAAA
ACCGGCCTGG AAAGTATGCT GGAATCTATG ATTCAGGAAC AGGAGGTATC AGCTCCTGAA
GTCCACGTCC TGGGAGATTC TGATAATTTC CCTCCTCAAT ACAACAGTCC AACGGACAAG
AAGCAAGCCT TAAAACTTAT TAACTGGCTT GAAACCGGCA GCAAATCACA CCCTGACGAT
CACCAAGATA GACAATACCA CCCTCAAAAG ATTCTGGACA TGATCGCTCC CGCCATGGAG
CGGCTAGCTC GACAAGTAGA GAGGACCATT GCTCATTCAA TAAACGTTTT AGGCAATCCA
GCCCCTGCTC GAATTTATCT TGGTGGACGC TTGATCCCGG CTGAGTCGGT CACTGCTTTC
TTGCAAGACC AATTAGGGCT AGAAGTCCAG GTCCTGGAAC CTCTCACCCC CACCAGAAAC
AACATCTCCT CCCCCATCAG CTCCCTGAAC AAGGAAGAGC GCATTTTTTT AACCAGCACT
ACTGGCTTGG CTTTGTCCAG CACAGAGCAG ACCCCAAATT TTTTAAACAC AGCCAAGAAT
CAGGAAAAGC AAAGGGTCGC AAAACGCAAT GCCACATTGG TCGCTTCAGC AGTGATCGCG
ATCTATTTGC TTATAGGGGG GTATTGGGTG CAACTTAATA ATGAGCTGGC CCAGGTCAGA
CAGAAAGTAT TCAGCTTGAA CCACAGGCTC GAAGAATTTT CACCCCTTAT TTCTCAAAAA
ATGATCAAAG ACATGATTGC TCAGGTTCAT AAGGATAGTT CGACACTTCA GGACCACAGC
CACGATCTCC TGCCAGTAGC GGCTATGAGA GACGTCATCT CTGCTACTCC AGAGCGTGTC
AGGCTGTTCA AAATTCGCAT GGAAACTGGC AAACCGAAAT CTGGCCAGGA CGTCCAAGTG
CTGCTTAAGG GCTATATAAT TGGCGAAGAA AAACAGCTCC AAACATATTT AGCAAGTTAC
CTCTATCGCC TGCGTCAATC TCCAGTATTC AACAAAACAA CACTCCAAGA GAGCTCAATC
CAAGAAGTGA GGACGCTAGG AAAAGTACTT GACTTCGTGA TCAAAGTGAA TCTGGAGCAA
ATATAA
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| Protein sequence | MANEKDVSST EKLLHVIRNK PEDETVAVFE SQAVHNKQKR TSKKSKRNHF VPFKPKETIG
VEIQDTHLNV VRMAQSGHGW EAIQALTIPM REEMALDSPE FRSFLKSQLQ SIEGIKKAHV
WAMLSASQGE IWHTKIPLMK KGLANAVFWA AKRDNDFEED KVVFDYRIQN QIADKDVKKY
WAMVSTFPKN TVKNLKDVFS KSGVDLEGIT LPAFSLQNLF THNWVDSKEK PFAVLHIYQH
NSSINIYDSD NKLLLSRTTK TGLESMLESM IQEQEVSAPE VHVLGDSDNF PPQYNSPTDK
KQALKLINWL ETGSKSHPDD HQDRQYHPQK ILDMIAPAME RLARQVERTI AHSINVLGNP
APARIYLGGR LIPAESVTAF LQDQLGLEVQ VLEPLTPTRN NISSPISSLN KEERIFLTST
TGLALSSTEQ TPNFLNTAKN QEKQRVAKRN ATLVASAVIA IYLLIGGYWV QLNNELAQVR
QKVFSLNHRL EEFSPLISQK MIKDMIAQVH KDSSTLQDHS HDLLPVAAMR DVISATPERV
RLFKIRMETG KPKSGQDVQV LLKGYIIGEE KQLQTYLASY LYRLRQSPVF NKTTLQESSI
QEVRTLGKVL DFVIKVNLEQ I
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