| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1986 |
|---|
| Symbol | |
|---|
| ID | 8419831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2279869 |
|---|
| End bp | 2281074 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645038574 |
|---|
| Product | protein of unknown function UPF0052 and CofD |
|---|
| Protein accession | YP_003198848 |
|---|
| Protein GI | 258406106 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01826] conserved hypothetical protein, cofD-related |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAA CCGGCACCCG CATCACTGTA ACCAAAAGCG CCCTGCTCCC GGACCCGGTC
AAGCTCGCCC GGTACGCCAA GGCGCCGGAA TTGGGTCCCA AAATCCTTTT TTTCAGCGGC
GGCACCGCCT TGCGGCCCTT GAGCCAAAAG CTCATCGAAT TCACGCACAA CTCCATCCAT
TTCATCACCC CGTTTGACTC AGGGGGCAGC TCTGCTGTCC TTCGCAAGGC GTTTGCCATG
CCGGCTATCG GCGATATCCG CAACCGGCTC ATGGCTCTGG CTGACCAAAG CCTGCACGGT
GCCCCTGAGA TCTATGAACT CTTTGCACTG AGGCTGCCCA AAGAGGCCGA TCCCGGTGCC
CTGAACGATC TTTTGCAATC CCTGATCCGG GGCAAACATC CGCTGGTGGC CGCCATACCG
GATCCAATGC GCAAGATCAT CCGCAACCAC CTTGGACGCT TCGCCGAGGC CATGCCCACA
GATTTCGATT TGCGCGGCGC GAGTATCGGC AATCTCATCC TCACCGCCGG GTATCTCGAT
TATCGCCGCC AACTCGACCC GGTCATCTTT CTCTTCGCCA ATCTCGTCCG GGTCCGCGGT
GTCGTCCGTC CGGTCCTCAA CAAAGATCTC CAACTGGCCG TCCGCCTTGA CGACGGGAGC
ACGGTCGTCG GGCAGCACCG CATCACCGGC AAGGAAACCG CTCCACTGAA CACCAAAATC
CGTTCGGCCT GGATTTGCGC CAGTTCCGAA GAGCCGGCCC CATTGCGGGT TCCGGTCCGC
AACAAGGTCA TGGAACAGAT CCAACAGGCT GAGCTCATCT GCTATCCCAT CGGCAGTTTC
TATTCCAGTC TGATCGCCAA CCTCCTGCCC GGGGGCATAG GACGGGCCAT TGCCTCTACT
CCCTGCCCCA AAGTTTTCAT TCCCAACACG AGCGGGGATC CTGAACTCCA CGGCCAGGAC
GTCATGGAGC AGGTTCGGAC CATCCTTTAT ACCTTGCAAC GGGATTTTCC TGAACCACTG
CCGACGCGCG ACCTGCTGAA CTTTGTGCTC ATCGATCACG ATTTGACGCT CTATCCCGGC
GGCGTTCCGC GGCACTCCCT GGAAAAAATG GGGTTGACCG TCATCGCCGG CGACCTGACC
ACAGAACAAA GCCGCCCGCT TCTCGATGCC ACACGCCTGA CAGAGGCGCT CTTATCGCTG
ACCTGA
|
|---|
| Protein sequence | MSATGTRITV TKSALLPDPV KLARYAKAPE LGPKILFFSG GTALRPLSQK LIEFTHNSIH
FITPFDSGGS SAVLRKAFAM PAIGDIRNRL MALADQSLHG APEIYELFAL RLPKEADPGA
LNDLLQSLIR GKHPLVAAIP DPMRKIIRNH LGRFAEAMPT DFDLRGASIG NLILTAGYLD
YRRQLDPVIF LFANLVRVRG VVRPVLNKDL QLAVRLDDGS TVVGQHRITG KETAPLNTKI
RSAWICASSE EPAPLRVPVR NKVMEQIQQA ELICYPIGSF YSSLIANLLP GGIGRAIAST
PCPKVFIPNT SGDPELHGQD VMEQVRTILY TLQRDFPEPL PTRDLLNFVL IDHDLTLYPG
GVPRHSLEKM GLTVIAGDLT TEQSRPLLDA TRLTEALLSL T
|
|---|
| |