| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1977 |
|---|
| Symbol | |
|---|
| ID | 8419822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2267487 |
|---|
| End bp | 2270228 |
|---|
| Gene Length | 2742 bp |
|---|
| Protein Length | 913 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 645038565 |
|---|
| Product | putative DNA repair protein |
|---|
| Protein accession | YP_003198839 |
|---|
| Protein GI | 258406097 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3857] ATP-dependent nuclease, subunit B |
|---|
| TIGRFAM ID | [TIGR03623] probable DNA repair protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.286475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGC TGGCCCGGCC CCCTGAGGAG GTGTGGCCGC AACATACCGA GACCACGTTG
TTCGCTGCTC TCTCGGCAGG GCATCTCGTT GTGACGGCCA CGAACCGTCT GGCTCGGGAA
CTCCGCGGTC GTTTCGCCCG TTGGAATATG GAGCACGGTC GCCGGGTTTG GCGCACACCG
GACATTCTGC CCTACGCGAC CTGGCTGAGC CGGAGCTATC AGACGATCTG GAGCGATCCG
GCCTCTCCAG ACGTGCCTCG CCTGCTGACC CCGGCCCAGG AACTCGCCGT CTGGGAGGAC
GCCGTTCAGC AGAGCCCGGA AGGTCGACGG TTGCTCAATG CCGGCGCTGC GGCCCGCAGC
GCCCGGGAGG CGTGGCAGTT GTGGCAGGAG TATTGTCTCA ACGAGGAGGC GATCCAGGCT
GAAGCCGGGC CGGATACCGA AGCTTTTCTT GGGTGGGCAG CAGCATTCCG CGATCGGTGT
CGCAAGCGGC AGTGGCTGGA TAGCGGCCGA CTGCCGCGGG CATTGAGGGG ACTTTTGGCC
CAGGGCAAAG GCGATATCCC GGAGGAAGTC ACCCTGGCTG GCTTTGATCT TGTCTCCCCG
ATGCAGCAAG AACTCGTTCA GACCCTGTCC GAGGCCGGCT GCCCGGTCTG GGTTCTGCAG
CCCCAGGAGG TGCAGAGCCG GGTCGCTTGT GTGCCCTGTG CGGACGCCCG GCAGGAGATG
GATGACGCCG CCCGCTGGGC GCGAGAGCTG CTGGAGGAGT CCGCCTCGAT TCGGATCGGC
ATTGTGGTTC CCAATCTTCA GGCTGTGCGT GAGGATGTCC TTGAGGCACT GGAAGCGGTT
CTTGAGCCGG AGCGGCTATT GCCCTGGGGT GGTGACACAC CTTCCTGCAT CAATGTCTCC
CTGGGCGGAC CGGTTGCTGA GACCGCTGTG GGCCGTTGCG CCCTGGGGCT GCTGCGACTT
GGGCGAACGA CGTTCAAGAC CGAAGATTTT GGCGCGTTGT TGCGCTCCCG CCATTGGGCC
GGGGGCGAGT CCGAATGGGC CGCGCGAGCG GAATTGGAGG CAGCGGTGTA TGCGGTTGGC
GAGCCGCAAT GGACCCGGAC GCTGGCGGAG TTTTTTCTGG CTCGGCACGG CGAAACGGAT
TGCCCGGAGA CAGCCCGGGC GCTGCACCGT TTTTGGGCTC GGCTCGATGA CCTTCCTCGG
AAACAGTCCT GGAGCCAATG GGCGGAAACG TTTGGCGAGG TGCTCCGCAG CGTTGGCTGG
CCCGGGGCCT CGGGGCAGCC AAGCGCAAGC TATCAGGCAG TGGAGGCTTG GCAGGAATGC
CTGGAAGGTC TGGAACAATT TGACCAGGTC CTGGAACCCG CCGGGTATGG TGAGGCCCTG
CAGCGGCTCG AACAGCTCGC CCGGGAGACC CTTTTCCAAC CAGAGTCCGG CCACCATCCG
GTGCAGGTCC TGGGACTTCT CGAAGCGGCC GGGAGCCGTT TCGATGCCCT GTGGGTCATG
GGCCTGACCG ACGAAGTCTG GCCTCCGGCG GCCCGTCCCC ACCCCCTTCT TCCCCATGCG
TTGCAAATCC ATTCCGACAT GCCCCATTGC GCTGCGCAAC GGGAATTGCG CTTTGCCCGG
CAAGTGACGC ACCGCCTGAG CACTGCCGCT CCGGAGGTCG TTTTCAGTTT GCCGCAACGC
GACGGCGACC GTGAGTTGCA GCCAAGCCCC CTGCTAGCCG ACCATCCCCG TATCGCGCGA
GATGAGCTGT TGCCCACCAC TGTCCCCTCC TTGTGGGAGC AGCTGGGTCA GGCAGCCGAA
CCCCATTGGG AACTGGACGA AGGCGCGCCC GCGCTGGTTG AGGGCACCAG GTTGCGCGGG
GGCACCGGAA CGCTCAAGGC CCAGGCGTTG TGTCCGTTTC AGGCCTTTGG CCGGTTCCGA
CTCCAGGCTG CTGCGGTCCG GCCGCCGGAG CCGGGAATAA CCGCCCTGGA GCGGGGCAAT
CTGGTGCACA AGGCCCTGGA GACATTTTGG GCCGAAATGC AAACACGTGA GCGGTTGCAG
GGAGCATCTG CCGAAACCAT CGCCGCCACA GCCAGAAAGG GGGCCCAAAA AGGCGTGGAG
CAACTCGCCG AGCGCCGCCC GATGACGTTG ACCGGGCGGC ACCGGGAACT CGAAGAGGAC
CGGCTGACTC GGCTTCTGGA ACAGTGGGCG GCTCGGGAAT TGGAACGCAC CCCCTTTGCA
GTGGTCGAAC GGGAACACCG GGTGGAGGCC AGTTTTGCTG GTGCCCGTTT ACGGATCGTT
TGCGATCGGG TCGACCGGCT CGACGACGGC CGCCTGGCGG TGGTGGACTA TAAAACCGGC
GAAATACGGG TTTCGGATTG GTTCGCCCCC CGCTTGCTGG AACCGCAATT GCCCCTGTAT
GCCTTGCTCG CGGAAACCGA GGTTGCGGGG ATTTTTGTGG CCCGCATCAA GACCGGGCAC
CTGGAATACG CCGGTGTGGT TGGCGACGAC CAGGTCCATT TGCGGTGCCG GGCGTGTGAG
TCCATGAAAG CCAATGCCGA GGGGCTTACC TGGCAGGAAT TGTTGGAAGT ATGGCGCGGT
CTACTGACCC AGTTGGTCTC GGAGTACATG CGCGGCGAGT GTGCGGTGGC CCCGGTGGAG
GAAAAGCGCA GCTGCCGGTT TTGTGACCTC AGGTCCTTGT GCCGGTTGAC CGACCGGAAG
CGGTACCCTT TCTTTGAACA CGACGGAGTG GACCCATCCT GA
|
|---|
| Protein sequence | MPKLARPPEE VWPQHTETTL FAALSAGHLV VTATNRLARE LRGRFARWNM EHGRRVWRTP
DILPYATWLS RSYQTIWSDP ASPDVPRLLT PAQELAVWED AVQQSPEGRR LLNAGAAARS
AREAWQLWQE YCLNEEAIQA EAGPDTEAFL GWAAAFRDRC RKRQWLDSGR LPRALRGLLA
QGKGDIPEEV TLAGFDLVSP MQQELVQTLS EAGCPVWVLQ PQEVQSRVAC VPCADARQEM
DDAARWAREL LEESASIRIG IVVPNLQAVR EDVLEALEAV LEPERLLPWG GDTPSCINVS
LGGPVAETAV GRCALGLLRL GRTTFKTEDF GALLRSRHWA GGESEWAARA ELEAAVYAVG
EPQWTRTLAE FFLARHGETD CPETARALHR FWARLDDLPR KQSWSQWAET FGEVLRSVGW
PGASGQPSAS YQAVEAWQEC LEGLEQFDQV LEPAGYGEAL QRLEQLARET LFQPESGHHP
VQVLGLLEAA GSRFDALWVM GLTDEVWPPA ARPHPLLPHA LQIHSDMPHC AAQRELRFAR
QVTHRLSTAA PEVVFSLPQR DGDRELQPSP LLADHPRIAR DELLPTTVPS LWEQLGQAAE
PHWELDEGAP ALVEGTRLRG GTGTLKAQAL CPFQAFGRFR LQAAAVRPPE PGITALERGN
LVHKALETFW AEMQTRERLQ GASAETIAAT ARKGAQKGVE QLAERRPMTL TGRHRELEED
RLTRLLEQWA ARELERTPFA VVEREHRVEA SFAGARLRIV CDRVDRLDDG RLAVVDYKTG
EIRVSDWFAP RLLEPQLPLY ALLAETEVAG IFVARIKTGH LEYAGVVGDD QVHLRCRACE
SMKANAEGLT WQELLEVWRG LLTQLVSEYM RGECAVAPVE EKRSCRFCDL RSLCRLTDRK
RYPFFEHDGV DPS
|
|---|
| |