Gene Dret_1977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1977 
Symbol 
ID8419822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2267487 
End bp2270228 
Gene Length2742 bp 
Protein Length913 aa 
Translation table11 
GC content65% 
IMG OID645038565 
Productputative DNA repair protein 
Protein accessionYP_003198839 
Protein GI258406097 
COG category[L] Replication, recombination and repair 
COG ID[COG3857] ATP-dependent nuclease, subunit B 
TIGRFAM ID[TIGR03623] probable DNA repair protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.286475 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAAGC TGGCCCGGCC CCCTGAGGAG GTGTGGCCGC AACATACCGA GACCACGTTG 
TTCGCTGCTC TCTCGGCAGG GCATCTCGTT GTGACGGCCA CGAACCGTCT GGCTCGGGAA
CTCCGCGGTC GTTTCGCCCG TTGGAATATG GAGCACGGTC GCCGGGTTTG GCGCACACCG
GACATTCTGC CCTACGCGAC CTGGCTGAGC CGGAGCTATC AGACGATCTG GAGCGATCCG
GCCTCTCCAG ACGTGCCTCG CCTGCTGACC CCGGCCCAGG AACTCGCCGT CTGGGAGGAC
GCCGTTCAGC AGAGCCCGGA AGGTCGACGG TTGCTCAATG CCGGCGCTGC GGCCCGCAGC
GCCCGGGAGG CGTGGCAGTT GTGGCAGGAG TATTGTCTCA ACGAGGAGGC GATCCAGGCT
GAAGCCGGGC CGGATACCGA AGCTTTTCTT GGGTGGGCAG CAGCATTCCG CGATCGGTGT
CGCAAGCGGC AGTGGCTGGA TAGCGGCCGA CTGCCGCGGG CATTGAGGGG ACTTTTGGCC
CAGGGCAAAG GCGATATCCC GGAGGAAGTC ACCCTGGCTG GCTTTGATCT TGTCTCCCCG
ATGCAGCAAG AACTCGTTCA GACCCTGTCC GAGGCCGGCT GCCCGGTCTG GGTTCTGCAG
CCCCAGGAGG TGCAGAGCCG GGTCGCTTGT GTGCCCTGTG CGGACGCCCG GCAGGAGATG
GATGACGCCG CCCGCTGGGC GCGAGAGCTG CTGGAGGAGT CCGCCTCGAT TCGGATCGGC
ATTGTGGTTC CCAATCTTCA GGCTGTGCGT GAGGATGTCC TTGAGGCACT GGAAGCGGTT
CTTGAGCCGG AGCGGCTATT GCCCTGGGGT GGTGACACAC CTTCCTGCAT CAATGTCTCC
CTGGGCGGAC CGGTTGCTGA GACCGCTGTG GGCCGTTGCG CCCTGGGGCT GCTGCGACTT
GGGCGAACGA CGTTCAAGAC CGAAGATTTT GGCGCGTTGT TGCGCTCCCG CCATTGGGCC
GGGGGCGAGT CCGAATGGGC CGCGCGAGCG GAATTGGAGG CAGCGGTGTA TGCGGTTGGC
GAGCCGCAAT GGACCCGGAC GCTGGCGGAG TTTTTTCTGG CTCGGCACGG CGAAACGGAT
TGCCCGGAGA CAGCCCGGGC GCTGCACCGT TTTTGGGCTC GGCTCGATGA CCTTCCTCGG
AAACAGTCCT GGAGCCAATG GGCGGAAACG TTTGGCGAGG TGCTCCGCAG CGTTGGCTGG
CCCGGGGCCT CGGGGCAGCC AAGCGCAAGC TATCAGGCAG TGGAGGCTTG GCAGGAATGC
CTGGAAGGTC TGGAACAATT TGACCAGGTC CTGGAACCCG CCGGGTATGG TGAGGCCCTG
CAGCGGCTCG AACAGCTCGC CCGGGAGACC CTTTTCCAAC CAGAGTCCGG CCACCATCCG
GTGCAGGTCC TGGGACTTCT CGAAGCGGCC GGGAGCCGTT TCGATGCCCT GTGGGTCATG
GGCCTGACCG ACGAAGTCTG GCCTCCGGCG GCCCGTCCCC ACCCCCTTCT TCCCCATGCG
TTGCAAATCC ATTCCGACAT GCCCCATTGC GCTGCGCAAC GGGAATTGCG CTTTGCCCGG
CAAGTGACGC ACCGCCTGAG CACTGCCGCT CCGGAGGTCG TTTTCAGTTT GCCGCAACGC
GACGGCGACC GTGAGTTGCA GCCAAGCCCC CTGCTAGCCG ACCATCCCCG TATCGCGCGA
GATGAGCTGT TGCCCACCAC TGTCCCCTCC TTGTGGGAGC AGCTGGGTCA GGCAGCCGAA
CCCCATTGGG AACTGGACGA AGGCGCGCCC GCGCTGGTTG AGGGCACCAG GTTGCGCGGG
GGCACCGGAA CGCTCAAGGC CCAGGCGTTG TGTCCGTTTC AGGCCTTTGG CCGGTTCCGA
CTCCAGGCTG CTGCGGTCCG GCCGCCGGAG CCGGGAATAA CCGCCCTGGA GCGGGGCAAT
CTGGTGCACA AGGCCCTGGA GACATTTTGG GCCGAAATGC AAACACGTGA GCGGTTGCAG
GGAGCATCTG CCGAAACCAT CGCCGCCACA GCCAGAAAGG GGGCCCAAAA AGGCGTGGAG
CAACTCGCCG AGCGCCGCCC GATGACGTTG ACCGGGCGGC ACCGGGAACT CGAAGAGGAC
CGGCTGACTC GGCTTCTGGA ACAGTGGGCG GCTCGGGAAT TGGAACGCAC CCCCTTTGCA
GTGGTCGAAC GGGAACACCG GGTGGAGGCC AGTTTTGCTG GTGCCCGTTT ACGGATCGTT
TGCGATCGGG TCGACCGGCT CGACGACGGC CGCCTGGCGG TGGTGGACTA TAAAACCGGC
GAAATACGGG TTTCGGATTG GTTCGCCCCC CGCTTGCTGG AACCGCAATT GCCCCTGTAT
GCCTTGCTCG CGGAAACCGA GGTTGCGGGG ATTTTTGTGG CCCGCATCAA GACCGGGCAC
CTGGAATACG CCGGTGTGGT TGGCGACGAC CAGGTCCATT TGCGGTGCCG GGCGTGTGAG
TCCATGAAAG CCAATGCCGA GGGGCTTACC TGGCAGGAAT TGTTGGAAGT ATGGCGCGGT
CTACTGACCC AGTTGGTCTC GGAGTACATG CGCGGCGAGT GTGCGGTGGC CCCGGTGGAG
GAAAAGCGCA GCTGCCGGTT TTGTGACCTC AGGTCCTTGT GCCGGTTGAC CGACCGGAAG
CGGTACCCTT TCTTTGAACA CGACGGAGTG GACCCATCCT GA
 
Protein sequence
MPKLARPPEE VWPQHTETTL FAALSAGHLV VTATNRLARE LRGRFARWNM EHGRRVWRTP 
DILPYATWLS RSYQTIWSDP ASPDVPRLLT PAQELAVWED AVQQSPEGRR LLNAGAAARS
AREAWQLWQE YCLNEEAIQA EAGPDTEAFL GWAAAFRDRC RKRQWLDSGR LPRALRGLLA
QGKGDIPEEV TLAGFDLVSP MQQELVQTLS EAGCPVWVLQ PQEVQSRVAC VPCADARQEM
DDAARWAREL LEESASIRIG IVVPNLQAVR EDVLEALEAV LEPERLLPWG GDTPSCINVS
LGGPVAETAV GRCALGLLRL GRTTFKTEDF GALLRSRHWA GGESEWAARA ELEAAVYAVG
EPQWTRTLAE FFLARHGETD CPETARALHR FWARLDDLPR KQSWSQWAET FGEVLRSVGW
PGASGQPSAS YQAVEAWQEC LEGLEQFDQV LEPAGYGEAL QRLEQLARET LFQPESGHHP
VQVLGLLEAA GSRFDALWVM GLTDEVWPPA ARPHPLLPHA LQIHSDMPHC AAQRELRFAR
QVTHRLSTAA PEVVFSLPQR DGDRELQPSP LLADHPRIAR DELLPTTVPS LWEQLGQAAE
PHWELDEGAP ALVEGTRLRG GTGTLKAQAL CPFQAFGRFR LQAAAVRPPE PGITALERGN
LVHKALETFW AEMQTRERLQ GASAETIAAT ARKGAQKGVE QLAERRPMTL TGRHRELEED
RLTRLLEQWA ARELERTPFA VVEREHRVEA SFAGARLRIV CDRVDRLDDG RLAVVDYKTG
EIRVSDWFAP RLLEPQLPLY ALLAETEVAG IFVARIKTGH LEYAGVVGDD QVHLRCRACE
SMKANAEGLT WQELLEVWRG LLTQLVSEYM RGECAVAPVE EKRSCRFCDL RSLCRLTDRK
RYPFFEHDGV DPS