Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1977 |
Symbol | |
ID | 8419822 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2267487 |
End bp | 2270228 |
Gene Length | 2742 bp |
Protein Length | 913 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 645038565 |
Product | putative DNA repair protein |
Protein accession | YP_003198839 |
Protein GI | 258406097 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3857] ATP-dependent nuclease, subunit B |
TIGRFAM ID | [TIGR03623] probable DNA repair protein |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.286475 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAAGC TGGCCCGGCC CCCTGAGGAG GTGTGGCCGC AACATACCGA GACCACGTTG TTCGCTGCTC TCTCGGCAGG GCATCTCGTT GTGACGGCCA CGAACCGTCT GGCTCGGGAA CTCCGCGGTC GTTTCGCCCG TTGGAATATG GAGCACGGTC GCCGGGTTTG GCGCACACCG GACATTCTGC CCTACGCGAC CTGGCTGAGC CGGAGCTATC AGACGATCTG GAGCGATCCG GCCTCTCCAG ACGTGCCTCG CCTGCTGACC CCGGCCCAGG AACTCGCCGT CTGGGAGGAC GCCGTTCAGC AGAGCCCGGA AGGTCGACGG TTGCTCAATG CCGGCGCTGC GGCCCGCAGC GCCCGGGAGG CGTGGCAGTT GTGGCAGGAG TATTGTCTCA ACGAGGAGGC GATCCAGGCT GAAGCCGGGC CGGATACCGA AGCTTTTCTT GGGTGGGCAG CAGCATTCCG CGATCGGTGT CGCAAGCGGC AGTGGCTGGA TAGCGGCCGA CTGCCGCGGG CATTGAGGGG ACTTTTGGCC CAGGGCAAAG GCGATATCCC GGAGGAAGTC ACCCTGGCTG GCTTTGATCT TGTCTCCCCG ATGCAGCAAG AACTCGTTCA GACCCTGTCC GAGGCCGGCT GCCCGGTCTG GGTTCTGCAG CCCCAGGAGG TGCAGAGCCG GGTCGCTTGT GTGCCCTGTG CGGACGCCCG GCAGGAGATG GATGACGCCG CCCGCTGGGC GCGAGAGCTG CTGGAGGAGT CCGCCTCGAT TCGGATCGGC ATTGTGGTTC CCAATCTTCA GGCTGTGCGT GAGGATGTCC TTGAGGCACT GGAAGCGGTT CTTGAGCCGG AGCGGCTATT GCCCTGGGGT GGTGACACAC CTTCCTGCAT CAATGTCTCC CTGGGCGGAC CGGTTGCTGA GACCGCTGTG GGCCGTTGCG CCCTGGGGCT GCTGCGACTT GGGCGAACGA CGTTCAAGAC CGAAGATTTT GGCGCGTTGT TGCGCTCCCG CCATTGGGCC GGGGGCGAGT CCGAATGGGC CGCGCGAGCG GAATTGGAGG CAGCGGTGTA TGCGGTTGGC GAGCCGCAAT GGACCCGGAC GCTGGCGGAG TTTTTTCTGG CTCGGCACGG CGAAACGGAT TGCCCGGAGA CAGCCCGGGC GCTGCACCGT TTTTGGGCTC GGCTCGATGA CCTTCCTCGG AAACAGTCCT GGAGCCAATG GGCGGAAACG TTTGGCGAGG TGCTCCGCAG CGTTGGCTGG CCCGGGGCCT CGGGGCAGCC AAGCGCAAGC TATCAGGCAG TGGAGGCTTG GCAGGAATGC CTGGAAGGTC TGGAACAATT TGACCAGGTC CTGGAACCCG CCGGGTATGG TGAGGCCCTG CAGCGGCTCG AACAGCTCGC CCGGGAGACC CTTTTCCAAC CAGAGTCCGG CCACCATCCG GTGCAGGTCC TGGGACTTCT CGAAGCGGCC GGGAGCCGTT TCGATGCCCT GTGGGTCATG GGCCTGACCG ACGAAGTCTG GCCTCCGGCG GCCCGTCCCC ACCCCCTTCT TCCCCATGCG TTGCAAATCC ATTCCGACAT GCCCCATTGC GCTGCGCAAC GGGAATTGCG CTTTGCCCGG CAAGTGACGC ACCGCCTGAG CACTGCCGCT CCGGAGGTCG TTTTCAGTTT GCCGCAACGC GACGGCGACC GTGAGTTGCA GCCAAGCCCC CTGCTAGCCG ACCATCCCCG TATCGCGCGA GATGAGCTGT TGCCCACCAC TGTCCCCTCC TTGTGGGAGC AGCTGGGTCA GGCAGCCGAA CCCCATTGGG AACTGGACGA AGGCGCGCCC GCGCTGGTTG AGGGCACCAG GTTGCGCGGG GGCACCGGAA CGCTCAAGGC CCAGGCGTTG TGTCCGTTTC AGGCCTTTGG CCGGTTCCGA CTCCAGGCTG CTGCGGTCCG GCCGCCGGAG CCGGGAATAA CCGCCCTGGA GCGGGGCAAT CTGGTGCACA AGGCCCTGGA GACATTTTGG GCCGAAATGC AAACACGTGA GCGGTTGCAG GGAGCATCTG CCGAAACCAT CGCCGCCACA GCCAGAAAGG GGGCCCAAAA AGGCGTGGAG CAACTCGCCG AGCGCCGCCC GATGACGTTG ACCGGGCGGC ACCGGGAACT CGAAGAGGAC CGGCTGACTC GGCTTCTGGA ACAGTGGGCG GCTCGGGAAT TGGAACGCAC CCCCTTTGCA GTGGTCGAAC GGGAACACCG GGTGGAGGCC AGTTTTGCTG GTGCCCGTTT ACGGATCGTT TGCGATCGGG TCGACCGGCT CGACGACGGC CGCCTGGCGG TGGTGGACTA TAAAACCGGC GAAATACGGG TTTCGGATTG GTTCGCCCCC CGCTTGCTGG AACCGCAATT GCCCCTGTAT GCCTTGCTCG CGGAAACCGA GGTTGCGGGG ATTTTTGTGG CCCGCATCAA GACCGGGCAC CTGGAATACG CCGGTGTGGT TGGCGACGAC CAGGTCCATT TGCGGTGCCG GGCGTGTGAG TCCATGAAAG CCAATGCCGA GGGGCTTACC TGGCAGGAAT TGTTGGAAGT ATGGCGCGGT CTACTGACCC AGTTGGTCTC GGAGTACATG CGCGGCGAGT GTGCGGTGGC CCCGGTGGAG GAAAAGCGCA GCTGCCGGTT TTGTGACCTC AGGTCCTTGT GCCGGTTGAC CGACCGGAAG CGGTACCCTT TCTTTGAACA CGACGGAGTG GACCCATCCT GA
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Protein sequence | MPKLARPPEE VWPQHTETTL FAALSAGHLV VTATNRLARE LRGRFARWNM EHGRRVWRTP DILPYATWLS RSYQTIWSDP ASPDVPRLLT PAQELAVWED AVQQSPEGRR LLNAGAAARS AREAWQLWQE YCLNEEAIQA EAGPDTEAFL GWAAAFRDRC RKRQWLDSGR LPRALRGLLA QGKGDIPEEV TLAGFDLVSP MQQELVQTLS EAGCPVWVLQ PQEVQSRVAC VPCADARQEM DDAARWAREL LEESASIRIG IVVPNLQAVR EDVLEALEAV LEPERLLPWG GDTPSCINVS LGGPVAETAV GRCALGLLRL GRTTFKTEDF GALLRSRHWA GGESEWAARA ELEAAVYAVG EPQWTRTLAE FFLARHGETD CPETARALHR FWARLDDLPR KQSWSQWAET FGEVLRSVGW PGASGQPSAS YQAVEAWQEC LEGLEQFDQV LEPAGYGEAL QRLEQLARET LFQPESGHHP VQVLGLLEAA GSRFDALWVM GLTDEVWPPA ARPHPLLPHA LQIHSDMPHC AAQRELRFAR QVTHRLSTAA PEVVFSLPQR DGDRELQPSP LLADHPRIAR DELLPTTVPS LWEQLGQAAE PHWELDEGAP ALVEGTRLRG GTGTLKAQAL CPFQAFGRFR LQAAAVRPPE PGITALERGN LVHKALETFW AEMQTRERLQ GASAETIAAT ARKGAQKGVE QLAERRPMTL TGRHRELEED RLTRLLEQWA ARELERTPFA VVEREHRVEA SFAGARLRIV CDRVDRLDDG RLAVVDYKTG EIRVSDWFAP RLLEPQLPLY ALLAETEVAG IFVARIKTGH LEYAGVVGDD QVHLRCRACE SMKANAEGLT WQELLEVWRG LLTQLVSEYM RGECAVAPVE EKRSCRFCDL RSLCRLTDRK RYPFFEHDGV DPS
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