Gene Dret_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1953 
Symbol 
ID8419798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2235648 
End bp2236832 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content59% 
IMG OID645038541 
ProductRadical SAM domain protein 
Protein accessionYP_003198815 
Protein GI258406073 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.66123 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGAA TATCCAAATT GTATTGTGAC GCCATCGAAC CGTCCGACGC CCTGCGCTAT 
GGCCGCCAAT CCGGAAAACT CCCCTCGCAC CTCCTGCAAT TCTCCGAGGA CAAAAAACCG
GTGGTGGTCT GGAACATGAC CCAACGGTGC AACCTCAAAT GCGTGCATTG CTATGCCCAA
GCCATCGACC CCGAGGGCAA GGACGAAATC AGCACCGACC AGGGCAAGGC GATCATCGAC
GACCTCGCTG CCTTCGGCGC CCCGGTCATG CTCTTTTCCG GCGGCGAACC CCTGGTGCGC
AAAGACCTGC CAGAACTCGC CTCTTACGCC GTGTCCAAAG GCATGCGCGC GGTCATTTCC
ACCAACGGCA CCCTGATCAC CAAGGACAAG GCCCGGGAAC TCAAATCCAT CGGCCTGTCC
TATGTCGGCA TCTCCCTGGA CGGCGGTGAA GCCACGCACG ACAAATTTCG CGGTGTGCCG
GGCGCTTTCA AAAAAGCCAT GGAAGGGGTC GACAATTGCC AGGCCGAAGG GCTCAAGGTC
GGCCTGCGTT TCACAGTCAA CAAGCGCAAT TTCGAAGAAG TCCCGACCAT CTTCCACATT
CTCAGGGAAA AGGAGATCCC CCGGGTCTGT TTTTACCACC TTGTGTACTC CGGGCGCGGC
TCGGAACTGA TCAAGGAAGA CCTGACCCAC GAGCAGACCC GCCGTCTGGT CGATCTGATC
ATGGACGAAA CCAAGGCCCT GTTCGACGAC GGGCTTCCCA AAGAGGTCCT GACTGTGGAC
AACCATGCCG ACGGCCCCTA CGTCTACCAG CGTCTGCTGC AGGAAAATCC GGAACGGGCC
AAACAGGTCA TGGAATTGCT CCAATTCAAC GAAGGCAACA ATTCCGGCCG TGGTATCGGG
TGCATCTCCT GGGACGGACA GGTCCACGCC GACCAGTTCT GGCGCATCCA CACCTTCGGC
AATGTCTTGG AGCGGCCGTT TTCCGAGATC TGGACCGACC CCTCCATTGA GTTGCTGCAC
AAGCTCAAGG ACAAAAAGGC CCATGTCGGC GGACGCTGCG CCAAGTGCCA ATATCTCAAC
ATCTGCGGCG GCAACTTCCG CGCCCGGGCC GAGGCCTATT ACGGAGATAT CTGGGCCCAG
GACCCGGCCT GCTATCTGAC GGACGAAGAA ATCGGCATCT CCTAG
 
Protein sequence
MIGISKLYCD AIEPSDALRY GRQSGKLPSH LLQFSEDKKP VVVWNMTQRC NLKCVHCYAQ 
AIDPEGKDEI STDQGKAIID DLAAFGAPVM LFSGGEPLVR KDLPELASYA VSKGMRAVIS
TNGTLITKDK ARELKSIGLS YVGISLDGGE ATHDKFRGVP GAFKKAMEGV DNCQAEGLKV
GLRFTVNKRN FEEVPTIFHI LREKEIPRVC FYHLVYSGRG SELIKEDLTH EQTRRLVDLI
MDETKALFDD GLPKEVLTVD NHADGPYVYQ RLLQENPERA KQVMELLQFN EGNNSGRGIG
CISWDGQVHA DQFWRIHTFG NVLERPFSEI WTDPSIELLH KLKDKKAHVG GRCAKCQYLN
ICGGNFRARA EAYYGDIWAQ DPACYLTDEE IGIS