| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1947 |
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| Symbol | |
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| ID | 8419792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2229941 |
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| End bp | 2231170 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645038535 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_003198809 |
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| Protein GI | 258406067 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.798188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCT CTGCCACATA CATATCACGG CTGGACCCCG CTCCGAGCAC CGGACCTCGA
AAGGTTATTG TCCTCGGGAG CACCGGCTCC ATTGGCTGCA GTGCACTGAA GGTCCTGGCC
CAACACCCGG ACACGTTCGA GGTCCTTGGT CTGGCCGGAG CGACCAACGC GAACCTGCTC
GCCGAGCAGG CCCGGCAGTG GCGACCGTCT GTCCTGGGAG TCCTTGACGA TACGGTCCGG
GAGGAGGTCC GCCACCTTCT TCCCGCAGAT TACCGGCCGC AATGGATGGT GGGCAACCCG
GGCTACCAGG AGATGGCCGC CCTTTCCGAA GCCGAACTGG TCCTGTGCGC CCAAGTCGGA
GCAGCCGGCT TGCCGCCGAC CCTGGCCGCC GTCAAAGCCG GCAAGATTGT GGCCCTGGCC
AACAAGGAAT CCCTGGTCCT GGCCGGGACT CTGGTGCGCG AACTCTGCAC GGCCTCCGGA
GCCTGTCTCC TGCCGGTGGA TTCCGAGCAC AACGCCATGT TCCAGGCCCT GGCTGGCCAC
GATCCACACG ACGTGCGCAA ATTTGTTCTG ACCGCCTCGG GCGGTCCGTT CCGAGGCCGT
TTGCGAGAAG AGCTGCGCCG GGTCACTCCG GATCAGGCCT TGGCCCATCC CAATTGGTCC
ATGGGAGCCA AAATCAGCAT CGACTCCTCG ACGCTGATGA ACAAAGGACT GGAATGCATT
GAGGCTGCCT ATCTCTTTGG TGTGGATATG GACCGCATCG AAGTCGTGGT CCATCCTGAA
AGCATTATCC ACTCCTTGGT TGAATACCGC GACGGCTCCC TGCTCGGCCA CCTCGGGGTG
CCGGACATGC AGATTCCCAT CGCCCATTGC CTGAGTTATC CAAACCGGCT GGATCTCGAC
CTTGAGCCAC TGGATCTGAC ACGCCTGAGC GGACTGCATT TTGAAAAGCC CGACGAATCG
ACGTTTCCCT GTCTGGCCCT GGCGCGTGAG GCCCTGGCCA ACGGCCCGAG CTTCCCGATC
GTGCTCAATG CCGCCAACGA AATCGCCGTG GATCTTTTTC TGCGTCGCGA ACTGGCCTAT
CTGGACATCG CCCGCTTGCT GGAACGGACC CTGCAAGCCC ATACTCCCAG TGCGGTAACA
GATCTCGAAT CCATCCACGC TGTCGACGAT TGGGCCCGAA AACAGGCCCG ATCCTTTGCC
GCGCAATATT TTTCTGCACC AAGCGCATAG
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| Protein sequence | MNTSATYISR LDPAPSTGPR KVIVLGSTGS IGCSALKVLA QHPDTFEVLG LAGATNANLL
AEQARQWRPS VLGVLDDTVR EEVRHLLPAD YRPQWMVGNP GYQEMAALSE AELVLCAQVG
AAGLPPTLAA VKAGKIVALA NKESLVLAGT LVRELCTASG ACLLPVDSEH NAMFQALAGH
DPHDVRKFVL TASGGPFRGR LREELRRVTP DQALAHPNWS MGAKISIDSS TLMNKGLECI
EAAYLFGVDM DRIEVVVHPE SIIHSLVEYR DGSLLGHLGV PDMQIPIAHC LSYPNRLDLD
LEPLDLTRLS GLHFEKPDES TFPCLALARE ALANGPSFPI VLNAANEIAV DLFLRRELAY
LDIARLLERT LQAHTPSAVT DLESIHAVDD WARKQARSFA AQYFSAPSA
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