Gene Dret_1921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1921 
Symbol 
ID8419764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2202484 
End bp2203389 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content63% 
IMG OID645038507 
Productprotein of unknown function DUF368 
Protein accessionYP_003198783 
Protein GI258406041 
COG category[S] Function unknown 
COG ID[COG2035] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTGCAA ACCGGAAAAC GACCGCCAAG ACCGCCTCGC TGCTTCCCTA TGCCGGCACA 
GTCTGCAAGG GGTTTCTGAT GGGCAGCGCT GATATCGTCC CCGGTGTCTC CGGGGGAACG
ATGGCCTTTA TCACCGGGAT CTACGAACGG TTGCTCAGCG CTCTGGCGGC TTTTGATTTC
CGGTTCGTGC GCCTGCTTGC CGCGCGCCGT TTCCGCCAGG CCGCGGCCCA TGTCCAACTC
GATTTTCTTA TCGCGCTCGG ACTGGGAGTG GGGGGCGCTG TGGTTTCCAT GGCTGGCCTG
CTGCATACCC TGCTCCAGAC CCACCGGGTT CTGGTCTTCG CCTTCTTTTT TGGGCTGGTC
GTGGCCTCGG CCTGGGTGAT CGGCGGACGT ATCGTTGGCT GGCGGCGCAG CGTGGTGGCG
ACCCTGTTGC TGGGGATCAT CGGGGGGTGG CTCGTGACCG GGCTGGTCCC GGTGGACGCC
TCGCACGCGT GGCTGGCGGT GTTCTTCAGC GGAGCAGTGG CGATTTCCGC CATGCTCATG
CCGGGGGTCA GCGGCGCGTT TCTGCTTTTG GTGCTGGGCC AATATGAATT TATCACCGGT
CTGTTACGCG ATCCATTCCG GCTCGAAGCC CTCCAGGGAC TGGGCGCCTT TGCGCTTGGC
TGTCTGTGCG GTATAGCTGT TTTTTCCCGG TTGCTGCGTT GGTGGCTGCG CCGTTTCCCG
GCTGTGGCCC TGGCCTTTTT GACCGGTTTC ATGCTCGGAG CTGTGCGGAC CCTGTGGCCG
TGGGCCGCGC CGGGCGCTGC AGATGTGTCC CTGAGCGTGA TCGTTGTGTG TATGGGCGCA
GGATTTGCCC TTGTAGTCAG TATTGCGCGT TTGGCGCATG GGAAGGAGAA CAAGCAACAT
GAGTGA
 
Protein sequence
MSANRKTTAK TASLLPYAGT VCKGFLMGSA DIVPGVSGGT MAFITGIYER LLSALAAFDF 
RFVRLLAARR FRQAAAHVQL DFLIALGLGV GGAVVSMAGL LHTLLQTHRV LVFAFFFGLV
VASAWVIGGR IVGWRRSVVA TLLLGIIGGW LVTGLVPVDA SHAWLAVFFS GAVAISAMLM
PGVSGAFLLL VLGQYEFITG LLRDPFRLEA LQGLGAFALG CLCGIAVFSR LLRWWLRRFP
AVALAFLTGF MLGAVRTLWP WAAPGAADVS LSVIVVCMGA GFALVVSIAR LAHGKENKQH
E