Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1917 |
Symbol | |
ID | 8419760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2199214 |
End bp | 2200296 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645038503 |
Product | twitching motility protein |
Protein accession | YP_003198779 |
Protein GI | 258406037 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.979204 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAAA TCGATGCTTT TTTCAAAATG ATGAACGAGT TGGGTGCGTC GGATCTGCAC CTGTCGACCG GGTCCCAGCC GATCATCCGT CTTCAGGGCG AATTGCAGCG GATCAAATTC AAAACCCTGG AAAACGAAGA GCTGCGCAAG ATGCTCTTCG AGATTACTCC TGAGCCGAAG ATCAAAGAAT TTGAAGAAAC CGGGGACGTG GACTTCGCCT ATGAAGTCCC GAACACCGCC CGCTACCGGG TCAATTTTTT CCGCCAGCGC CTGGGCGTGG GGGCGGTCTT CCGGGAAATC CCCCAGGAGA TCTTGAGCAT TGATGACCTC GGGTTGCCGC AGGTGTTGAA GAATCTCGCT GAACTGCCCA AGGGACTGGT CCTGGTCACC GGGCCGACCG GCAGCGGGAA GTCGACGACC CTGGCCGCGA TCATCGACTA CGCCAACCGC AACCGCCGCG ATCACATCCT GACCATCGAA GACCCCATCG AATTTGTCCA CCGGCCCATC AATTGCCTTA TCAACCAGCG TGAAGTCGGA CGGGATACCC TCAGCTTCAA ATCCGCCCTG CGGGGCGCTC TGCGTGAAGA CCCGGACATC ATTCTGGTCG GCGAATTGCG GGATCTGGAG ACCATCGAGC TGGCCCTGGA AGCCGCTGAA ACAGGCCACC TTGTTTTCGG GACCTTGCAC ACCATTTCCG CGCCCAAGAC CGTCGACCGG ATCATCGAGG TCTTCCCCGG CGAGCACCAG GGGCAGATCC GTTCCAGTCT GGCCGACTCC CTGCGGGCCA TCGTGGCCCA GAATCTGTTC AAGCGTGTCG ATGTCAAAGG CCGAGTGGCG ACCCTGGAAG TCCTGATCGC CACCCCGGCG GTGCGCAACC TCATTCGGGA AAACAAGATC TTTCAGCTCA ATTCCGTGAT TGAGACGGGG CGGAAATTCG GGATGCAATC CCTGGACGAC GCCATTATGG AGCAGCTCAA ACTCGGTCGT ATCGATCCGG CAGCGGCCTA CAACAAGGCC GTCAACAAGG ACAAATTCAG GCCGTTTTTG ACCGAGTCAC CAGAAGATTT CACCGAGGTG TAG
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Protein sequence | MAQIDAFFKM MNELGASDLH LSTGSQPIIR LQGELQRIKF KTLENEELRK MLFEITPEPK IKEFEETGDV DFAYEVPNTA RYRVNFFRQR LGVGAVFREI PQEILSIDDL GLPQVLKNLA ELPKGLVLVT GPTGSGKSTT LAAIIDYANR NRRDHILTIE DPIEFVHRPI NCLINQREVG RDTLSFKSAL RGALREDPDI ILVGELRDLE TIELALEAAE TGHLVFGTLH TISAPKTVDR IIEVFPGEHQ GQIRSSLADS LRAIVAQNLF KRVDVKGRVA TLEVLIATPA VRNLIRENKI FQLNSVIETG RKFGMQSLDD AIMEQLKLGR IDPAAAYNKA VNKDKFRPFL TESPEDFTEV
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