Gene Dret_1917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1917 
Symbol 
ID8419760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2199214 
End bp2200296 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content58% 
IMG OID645038503 
Producttwitching motility protein 
Protein accessionYP_003198779 
Protein GI258406037 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.979204 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCAAA TCGATGCTTT TTTCAAAATG ATGAACGAGT TGGGTGCGTC GGATCTGCAC 
CTGTCGACCG GGTCCCAGCC GATCATCCGT CTTCAGGGCG AATTGCAGCG GATCAAATTC
AAAACCCTGG AAAACGAAGA GCTGCGCAAG ATGCTCTTCG AGATTACTCC TGAGCCGAAG
ATCAAAGAAT TTGAAGAAAC CGGGGACGTG GACTTCGCCT ATGAAGTCCC GAACACCGCC
CGCTACCGGG TCAATTTTTT CCGCCAGCGC CTGGGCGTGG GGGCGGTCTT CCGGGAAATC
CCCCAGGAGA TCTTGAGCAT TGATGACCTC GGGTTGCCGC AGGTGTTGAA GAATCTCGCT
GAACTGCCCA AGGGACTGGT CCTGGTCACC GGGCCGACCG GCAGCGGGAA GTCGACGACC
CTGGCCGCGA TCATCGACTA CGCCAACCGC AACCGCCGCG ATCACATCCT GACCATCGAA
GACCCCATCG AATTTGTCCA CCGGCCCATC AATTGCCTTA TCAACCAGCG TGAAGTCGGA
CGGGATACCC TCAGCTTCAA ATCCGCCCTG CGGGGCGCTC TGCGTGAAGA CCCGGACATC
ATTCTGGTCG GCGAATTGCG GGATCTGGAG ACCATCGAGC TGGCCCTGGA AGCCGCTGAA
ACAGGCCACC TTGTTTTCGG GACCTTGCAC ACCATTTCCG CGCCCAAGAC CGTCGACCGG
ATCATCGAGG TCTTCCCCGG CGAGCACCAG GGGCAGATCC GTTCCAGTCT GGCCGACTCC
CTGCGGGCCA TCGTGGCCCA GAATCTGTTC AAGCGTGTCG ATGTCAAAGG CCGAGTGGCG
ACCCTGGAAG TCCTGATCGC CACCCCGGCG GTGCGCAACC TCATTCGGGA AAACAAGATC
TTTCAGCTCA ATTCCGTGAT TGAGACGGGG CGGAAATTCG GGATGCAATC CCTGGACGAC
GCCATTATGG AGCAGCTCAA ACTCGGTCGT ATCGATCCGG CAGCGGCCTA CAACAAGGCC
GTCAACAAGG ACAAATTCAG GCCGTTTTTG ACCGAGTCAC CAGAAGATTT CACCGAGGTG
TAG
 
Protein sequence
MAQIDAFFKM MNELGASDLH LSTGSQPIIR LQGELQRIKF KTLENEELRK MLFEITPEPK 
IKEFEETGDV DFAYEVPNTA RYRVNFFRQR LGVGAVFREI PQEILSIDDL GLPQVLKNLA
ELPKGLVLVT GPTGSGKSTT LAAIIDYANR NRRDHILTIE DPIEFVHRPI NCLINQREVG
RDTLSFKSAL RGALREDPDI ILVGELRDLE TIELALEAAE TGHLVFGTLH TISAPKTVDR
IIEVFPGEHQ GQIRSSLADS LRAIVAQNLF KRVDVKGRVA TLEVLIATPA VRNLIRENKI
FQLNSVIETG RKFGMQSLDD AIMEQLKLGR IDPAAAYNKA VNKDKFRPFL TESPEDFTEV