| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1906 |
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| Symbol | |
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| ID | 8419749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2190543 |
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| End bp | 2191277 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 645038492 |
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| Product | outer membrane assembly lipoprotein YfiO |
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| Protein accession | YP_003198768 |
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| Protein GI | 258406026 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4105] DNA uptake lipoprotein |
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| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000817715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.423153 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCAATA AAAAGACGTT GCTGACCGCT TTGCTGCTCC TGTTTCTCTG GGGCAGCATG
GGTTGTGGCA CGGTGGATTA CTTCTTCTTG AAGCCTCCGG AAGACACAGC CCAGGAATTG
GCTGAAGCCG GCCGGGCGGC TATGGCTGAG AAGGATTACG ACGCGGCGAT TGAGTATTTT
ACCAAACTCA AGGAACGCTA CCCGTTTAGT CCCTATACAC CCGACGCGGA ACTCGCCCTG
GGCGACGCCT ATTTTCTGGA CGAACAATAC AAGGCCGCAG TGGACACTTA TAAGGAGTTC
GAGTCCTTAC ATCCACGGCA CAAGGCCATT CCCCATGTTC TGTTCCAGAT AGGCTTGGCG
AATTTCAAGC AATTTGATTC CATCGACCGG CCGCAGACCA ATATGGAAGA GGCATTGCAG
TATTTTCGCC GTGTTCAGCA GGGATTTCCT GAAACCCCGT ATGCCGAGAA GGCGGGTGAC
TATATCACTC AATGCCGCCG TTACCAGGCC GAGCACGAAT TGTTCGTGGC GGATTTTTAT
TGGCGCCGAG AGGATTTTGG AGCAGCCTGG AAACGCTACG CCTATGTCGC TGAGGAATTT
GCCGAACTGC CGAAAATCCA GGACTACGCC CGGGATCGAC AGGAGATCGC CTATTTGCGC
TACCAGCAGC ATCGCTCGCA GACCAAGCGG GAAGAGGAGC AGGGCAGCTG GAAGCAGTGG
TTCGATTGGC TCTAA
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| Protein sequence | MGNKKTLLTA LLLLFLWGSM GCGTVDYFFL KPPEDTAQEL AEAGRAAMAE KDYDAAIEYF
TKLKERYPFS PYTPDAELAL GDAYFLDEQY KAAVDTYKEF ESLHPRHKAI PHVLFQIGLA
NFKQFDSIDR PQTNMEEALQ YFRRVQQGFP ETPYAEKAGD YITQCRRYQA EHELFVADFY
WRREDFGAAW KRYAYVAEEF AELPKIQDYA RDRQEIAYLR YQQHRSQTKR EEEQGSWKQW
FDWL
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